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[191503_at] Domain of unknown function

Description Y51A2B.3 /REP_DB=WormBase Gene ID /WP=CE16657 /TR=O45954 /GB=CAA16390.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Domain of unknown function
Cluster 6grp_total > 27      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 1.8
(-3)
A 		22.7
(3)
A 		17.6
(1.5)
A 		14.9
(0.8)
A 		21
B 22.3
(0.1)
A 		28.3
(1.1)
A 		3.3
(-3)
A 		39.8
(3)
A 		37
C 24.1
(-0.9)
A 		22.4
(-1.1)
A 		2.4
(-3)
A 		65
(3)
A 		63
avr 16.1
(-1.4) 		24.5
(0.1) 		7.8
(-3) 		39.9
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 35.9
(3)
A 		4.6
(-2.7)
A 		2.9
(-3)
A 		6.1
(-2.4)
A 		4.6
(-2.7)
A 		13.4
(-1.1)
A 		33
B 10.2
(-0.4)
A 		14.5
(1.2)
A 		14.6
(1.3)
A 		8.8
(-0.9)
A 		19.1
(3)
A 		3.4
(-3)
A 		16
C 20.3
(0.9)
A 		24.8
(1.9)
A 		12.1
(-0.9)
A 		2
(-3)
A 		2.6
(-2.9)
A 		30.2
(3)
A 		28
avr 22.1
(3) 		14.6
(0.3) 		9.9
(-1.4) 		5.6
(-3) 		8.8
(-1.8) 		15.7
(0.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.6
(-3)
A 		4.9
(3)
A 		4.6
(2.6)
A 		2.2
(-0.8)
A 		4
B 7.1
(1.9)
A 		7
(1.8)
A 		0.8
(-3)
A 		8.5
(3)
A 		8
C 8
(1.2)
A 		6.4
(0.3)
A 		0.8
(-3)
A 		11
(3)
A 		10
avr 5.2
(0.6) 		6.1
(1.7) 		2.1
(-3) 		7.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 6.6
(3)
A 		1.6
(-2)
A 		0.6
(-3)
A 		1.6
(-2)
A 		1.4
(-2.2)
A 		3.3
(-0.3)
A 		6
B 3.6
(-0.9)
A 		4.8
(0.2)
A 		3.5
(-1)
A 		2.3
(-2.1)
A 		7.8
(3)
A 		1.3
(-3)
A 		7
C 7.5
(1.4)
A 		7.6
(1.5)
A 		3.1
(-1.3)
A 		0.4
(-3)
A 		0.8
(-2.8)
A 		10.1
(3)
A 		10
avr 5.9
(3) 		4.7
(1.4) 		2.4
(-1.7) 		1.4
(-3) 		3.3
(-0.5) 		4.9
(1.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191503_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13267
Sequence Type Exemplar sequence
Representative Public ID Y51A2B.3 NCBI
Target Description Y51A2B.3 /REP_DB=WormBase Gene ID /WP=CE16657 /TR=O45954 /GB=CAA16390.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Domain of unknown function
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075194(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075194 NCBI Caenorhabditis elegans Y51A2B.3 (Y51A2B.3) mRNA, complete cds. 11/11 None
Y51A2B.3 ENSEMBL cdna:known chromosome:CEL140:V:18383194:18385264:-1 gene:Y51A2B.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034639 5/11 Cross Hyb Matching Probes None
GENEFINDER00000034653 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18383193-18385264(-) 100.0 100.0
Public Domain and Genome References
Gene Title Domain of unknown function
Ensembl Y51A2B.3
Entrez Gene 190128 Entrez gene
SwissProt O45954 EMBL-EBI
WormBase CE16657 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16390 Hypothetical protein Y51A2B.3 [Caenorhabditis elegans] ref|NP_507595.1| Y51A2B.3 [Caenorhabditis elegans] 1.0E-142
blast CAB03998 Hypothetical protein C54E10.5 [Caenorhabditis elegans] ref|NP_507673.2| C54E10.5 [Caenorhabditis elegans] 6.0E-79
blast CAB04316 Hypothetical protein F36D3.2 [Caenorhabditis elegans] ref|NP_507179.3| Nuclear Hormone Receptor family member (nhr-54) [Caenorhabditis elegans] sp|O45460|NHR54_CAEEL Nuclear hormone receptor family member nhr-54 1.0E-75
Sequence
Target Sequence 
>C. ELEGANS:191503_AT
gagcgatatgccatgtcggcggaaatatttggaaaacggtgttatgaggaaaaaacaaaa
tttttcgaattcagcacatttttgcggtcaatagagcgcagagaaacgagacactctcga
tgtcggcgtctcttctcactcttggctaggtgtaaaacctaccgtaacccggttattttt
atgataatgttacatgagatgcatgtttttcaaatcagcgcaaaattctggttcgatgtt
ctcggaggaaggctaatcaagtactttgacataattgtcaagccatatttggagcttaac
ctcactgaaactgaagtcacctacatcctatgtcaaattgtttgtaattatgcaggaaga
cgacttcaaggacaaatccaggcggctggagagcgatttttagaggaaatttctgataat
ttgcatagttactataaaaacttaagggaaaaatttgaaaattacgcgttaagattagcg
aaaatgatgcaaattgtgaatcaaatgttgaatatccagctgaaaagcaagaacaatatg
gatgtggcaatgctctttgacatgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGATATGCCATGTCGGCGGAAA 334 387 223 Antisense
ATTCAGCACATTTTTGCGGTCAATA 626 11 291 Antisense
AACGAGACACTCTCGATGTCGGCGT 443 143 327 Antisense
CTCTTCTCACTCTTGGCTAGGTGTA 46 231 352 Antisense
GCAAAATTCTGGTTCGATGTTCTCG 236 319 442 Antisense
GATGTTCTCGGAGGAAGGCTAATCA 123 409 457 Antisense
TTTGGAGCTTAACCTCACTGAAACT 367 665 510 Antisense
AACTGAAGTCACCTACATCCTATGT 48 143 531 Antisense
GACTTCAAGGACAAATCCAGGCGGC 703 369 584 Antisense
CCAGGCGGCTGGAGAGCGATTTTTA 209 265 600 Antisense
GTGGCAATGCTCTTTGACATGTTCA 178 491 766 Antisense
Sequence Source Affymetrix Proprietary Database