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[191501_at] 60S ribosomal protein L5

Description F54C9.5 /REP_DB=WormBase Gene ID /WP=CE02255 /TR=SW:P49405 /GB=CAA90251.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=60S ribosomal protein L5
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 20      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 40      4grp_total > 17      6grp_highest_sub > 03_04      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17749
1 2 3 4 range
A 26763.1
(-3)
P 		34014.7
(0.3)
P 		31377.5
(-0.9)
P 		39976.2
(3)
P 		13213
B 29126.5
(-3)
P 		29139.9
(-3)
P 		30845.4
(-1.3)
P 		35202.5
(3)
P 		6076
C 24586.5
(-3)
P 		26817.4
(-2.2)
P 		25357.3
(-2.7)
P 		42335
(3)
P 		17749
avr 26825.4
(-3) 		29990.7
(-1.5) 		29193.4
(-1.8) 		39171.2
(3) 		12346

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9319
1 2 3 4 5 6 range
A 27098.3
(3)
P 		21822.1
(-2)
P 		24518.9
(0.6)
P 		23543.8
(-0.4)
P 		20777.3
(-3)
P 		23299.2
(-0.6)
P 		6321
B 21007.8
(0.8)
P 		22860.1
(3)
P 		21745.4
(1.7)
P 		22339.4
(2.4)
P 		17779.4
(-3)
P 		18349.8
(-2.3)
P 		5081
C 20197.6
(-2)
P 		23679.3
(1.4)
P 		25378.3
(3)
P 		24506.5
(2.2)
P 		21033.9
(-1.2)
P 		19187.1
(-3)
P 		6191
avr 22767.9
(1.3) 		22787.2
(1.4) 		23880.9
(3) 		23463.2
(2.4) 		19863.5
(-3) 		20278.7
(-2.4) 		4017
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3893
1 2 3 4 range
A 9744.5
(3)
P 		7383.7
(-0.6)
P 		8202.7
(0.6)
P 		5851.7
(-3)
P 		3893
B 9288.2
(3)
P 		7196.9
(-2.9)
P 		7147.6
(-3)
P 		7501.7
(-2)
P 		2141
C 8138.8
(0.5)
P 		7710.2
(-1)
P 		8837.8
(3)
P 		7138.3
(-3)
P 		1700
avr 9057.2
(3) 		7430.3
(-1.4) 		8062.7
(0.3) 		6830.6
(-3) 		2227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2833
1 2 3 4 5 6 range
A 4995.4
(-3)
P 		7761
(3)
P 		5339.7
(-2.3)
P 		5971.3
(-0.9)
P 		6269.7
(-0.2)
P 		5672.6
(-1.5)
P 		2766
B 7309.7
(2.2)
P 		7609.2
(3)
P 		5280.4
(-3)
P 		5916.9
(-1.4)
P 		7223.5
(2)
P 		6842.6
(1)
P 		2329
C 7486.4
(3)
P 		7225.3
(2.4)
P 		6459.2
(0.6)
P 		4928.3
(-3)
P 		6806.3
(1.4)
P 		6423
(0.5)
P 		2558
avr 6597.2
(0.1) 		7531.8
(3) 		5693.1
(-2.7) 		5605.5
(-3) 		6766.5
(0.6) 		6312.7
(-0.8) 		1926
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191501_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3600
Sequence Type Exemplar sequence
Representative Public ID F54C9.5 NCBI
Target Description F54C9.5 /REP_DB=WormBase Gene ID /WP=CE02255 /TR=SW:P49405 /GB=CAA90251.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=60S ribosomal protein L5
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063410(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063410 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-5) (rpl-5) mRNA, complete cds. 11/11 None
SNAP00000013422 ENSEMBL cdna:SNAP chromosome:CEL140:II:8569855:8572741:1 11/11 None
GENEFINDER00000013441 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8569855:8570881:1 11/11 None
F54C9.5.2 ENSEMBL cdna:known chromosome:CEL140:II:8569847:8570960:1 gene:F54C9.5 11/11 None
F54C9.5.3 ENSEMBL cdna:known chromosome:CEL140:II:8569847:8570960:1 gene:F54C9.5 11/11 None
F54C9.5.1 ENSEMBL cdna:known chromosome:CEL140:II:8569849:8570960:1 gene:F54C9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8569851-8570878(+) 100.0 100.0
Public Domain and Genome References
Gene Title 60S ribosomal protein L5
Gene Symbol rpl-5
Ensembl F54C9.5
Entrez Gene 174371 Entrez gene
SwissProt P49405 EMBL-EBI
WormBase CE02255 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249390_AT 60S ribosomal protein L5 (RPL5C), pseudogene at
ATH1-121501:249466_AT 60S ribosomal protein L5 (RPL5B) at
CANINE:1599547_AT similar to 60S ribosomal protein L5 cfa
CANINE:1594756_AT similar to 60S ribosomal protein L5 cfa
CANINE:1584775_S_AT similar to 60S ribosomal protein L5 cfa
CANINE_2:CFAAFFX.17937.1.S1_S_AT similar to 60S ribosomal protein L5 cfa
CANINE_2:CFAAFFX.30860.1.S1_S_AT similar to 60S ribosomal protein L5 cfa
CHICKEN:GGA.4962.1.S1_AT ribosomal protein L5 gga
CHICKEN:GGA.4962.2.S1_S_AT Ribosomal protein L5 gga
CHICKEN:GGA.4962.2.S1_X_AT Ribosomal protein L5 gga
CHICKEN:GGA.4962.4.S1_AT Ribosomal protein L5 gga
CHICKEN:GGA.4962.2.S2_AT Ribosomal protein L5 gga
HG-U133_PLUS_2:210034_S_AT ribosomal protein L5 hs
HG-U133A_2:210034_S_AT ribosomal protein L5 hs
HG-U133A:210034_S_AT ribosomal protein L5 hs
HG-U133A:210035_S_AT ribosomal protein L5 hs
HG-U133_PLUS_2:210035_S_AT ribosomal protein L5 hs
HG-U133A_2:210035_S_AT ribosomal protein L5 hs
HG-U133_PLUS_2:200937_S_AT ribosomal protein L5 hs
HG-U133A_2:200937_S_AT ribosomal protein L5 hs
HG-U133A:200937_S_AT ribosomal protein L5 hs
HG-FOCUS:200937_S_AT ribosomal protein L5 hs
HU35KSUBB:RC_R49575_AT ribosomal protein L5 hs
U133_X3P:G4506654_3P_X_AT ribosomal protein L5 hs
U133_X3P:G4506654_3P_A_AT ribosomal protein L5 hs
U133_X3P:G1575566_RC_3P_A_AT ribosomal protein L5 hs
U133_X3P:HS.180946.5.S1_3P_AT ribosomal protein L5 hs
U133_X3P:HS.180946.1.A1_3P_A_AT ribosomal protein L5 hs
HG-U133_PLUS_2:1556498_AT ribosomal protein L5 hs
HG-U133A_2:213080_X_AT ribosomal protein L5 hs
HG-U133_PLUS_2:213080_X_AT ribosomal protein L5 hs
HG-U133A:213080_X_AT ribosomal protein L5 hs
HG-U95AV2:33660_AT ribosomal protein L5 hs
HG-U95AV2:33661_AT ribosomal protein L5 hs
HG-U133_PLUS_2:242501_AT Ribosomal protein L5 hs
HG-U133B:242501_AT Ribosomal protein L5 hs
U133_X3P:HS2.381335.1.A1_3P_AT Ribosomal protein L5 hs
MOUSE430_2:1423665_A_AT ribosomal protein L5 mm
MOUSE430A_2:1423665_A_AT ribosomal protein L5 mm
MOE430A:1423665_A_AT ribosomal protein L5 mm
MOUSE430A_2:1423666_S_AT ribosomal protein L5 mm
MOE430A:1423666_S_AT ribosomal protein L5 mm
MOUSE430_2:1423666_S_AT ribosomal protein L5 mm
MOUSE430A_2:1451077_AT ribosomal protein L5 mm
MOE430A:1451077_AT ribosomal protein L5 mm
MOUSE430_2:1451077_AT ribosomal protein L5 mm
MU11KSUBA:AA409561_RC_F_AT ribosomal protein L5 mm
MU11KSUBA:AA589525_RC_F_AT ribosomal protein L5 mm
MU11KSUBB:MSA.2661.0_F_AT ribosomal protein L5 mm
MG-U74AV2:101129_AT ribosomal protein L5 mm
MU11KSUBB:X83590_RC_F_AT ribosomal protein L5 mm
MG-U74CV2:134286_AT Ribosomal protein L5 (Rpl5), mRNA mm
MOUSE430_2:1447460_AT Ribosomal protein L5 (Rpl5), mRNA mm
MOE430B:1447460_AT Ribosomal protein L5 (Rpl5), mRNA mm
MU19KSUBB:TC26305_AT Ribosomal protein L5 (Rpl5), mRNA mm
RG-U34A:M17419_AT ribosomal protein L5 rn
RAE230A:1398761_AT ribosomal protein L5 rn
RAT230_2:1398761_AT ribosomal protein L5 rn
YEAST_2:1769919_AT Protein component of the large (60S) ribosomal subunit with similarity to E. coli L18 and rat L5 ribosomal proteins; binds 5S rRNA and is required for 60S subunit assembly Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
8097 5S rRNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAI70401 Hypothetical protein F54C9.6b [Caenorhabditis elegans] ref|NP_001022192.1| F54C9.6b [Caenorhabditis elegans] 0.0
blast CAA90252 Hypothetical protein F54C9.6a [Caenorhabditis elegans] ref|NP_001022191.1| F54C9.6a [Caenorhabditis elegans] 0.0
blast CAE57581 Hypothetical protein CBG00560 [Caenorhabditis briggsae] 0.0
blast CAA90251 Hypothetical protein F54C9.5 [Caenorhabditis elegans] ref|NP_495811.1| Ribosomal Protein, Large subunit family member (rpl-5) [Caenorhabditis elegans] sp|P49405|RL5_CAEEL 60S ribosomal protein L5 1.0E-139
blast CAE57582 Hypothetical protein CBG00561 [Caenorhabditis briggsae] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR005484 EMBL-EBI Ribosomal protein L18P/L5E 2.8E-79
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.1E-31
Sequence
Target Sequence 
>C. ELEGANS:191501_AT
ggactcaaggtcggacttaccaactacgccgctgcttacgccaccggacttcttcttgcc
cgtcgtcacttgaagaccatcggacttgactccacctacaagggccacgaagagcttact
ggagaagactacaatgtagaagaggagggagaccgcgctccattcaaggctgtcctcgac
atcggacttgctcgcaccaccaccggatccaagatcttcgctgtgatgaagggagttgct
gatggaggcatcaacgttccccacagtgagagcagattcttcggattcgatcaagagtcg
aaggagtacaatgctgaggcccaccgcgaccgcattctcggaaagcatgttgctgactac
atgacctacttgaaggaagaggatgaggatcgttacaagcgccaattctccaagttcctt
gccgctggattgaacgccgataaccttgttgccacttatcaaaaggtccactccgccatc
cgtgctgatgcctctccagccgcaaagaaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTCAAGGTCGGACTTACCAACT 590 523 271 Antisense
TGAAGACCATCGGACTTGACTCCAC 246 575 341 Antisense
CCATTCAAGGCTGTCCTCGACATCG 304 271 430 Antisense
ACCACCGGATCCAAGATCTTCGCTG 20 87 469 Antisense
TCAACGTTCCCCACAGTGAGAGCAG 562 629 521 Antisense
CGCGACCGCATTCTCGGAAAGCATG 285 255 595 Antisense
TTGCTGACTACATGACCTACTTGAA 54 703 620 Antisense
AGGATCGTTACAAGCGCCAATTCTC 369 57 656 Antisense
TCCAAGTTCCTTGCCGCTGGATTGA 36 271 679 Antisense
TTGAACGCCGATAACCTTGTTGCCA 286 683 700 Antisense
ATGCCTCTCCAGCCGCAAAGAAGGC 360 41 758 Antisense
Sequence Source Affymetrix Proprietary Database