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[191500_at] 7TM chemoreceptor, srh family

Description F37B4.5 /REP_DB=WormBase Gene ID /WP=CE25875 /GEN=srh-270 /TR=O45162 /GB=AAK18950.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 12      4grp_total > 19      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 23.6
(-1)
A 		4.4
(-2.8)
A 		2.4
(-3)
A 		65.6
(3)
A 		63
B 12.9
(-1.9)
A 		51.2
(3)
A 		4.1
(-3)
A 		7.2
(-2.6)
A 		47
C 6
(-2.9)
A 		5.4
(-3)
A 		9.4
(-2.3)
A 		42.2
(3)
A 		37
avr 14.2
(-1.4) 		20.3
(-0.3) 		5.3
(-3) 		38.3
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 20.4
(-0.6)
A 		44
(3)
A 		26.4
(0.3)
A 		4.6
(-3)
A 		17.1
(-1.1)
A 		11.3
(-2)
A 		39
B 25.6
(3)
A 		23.5
(2.4)
A 		20
(1.5)
A 		16
(0.4)
A 		3.8
(-3)
A 		9.7
(-1.4)
A 		22
C 1.9
(-3)
A 		48.6
(3)
A 		2.4
(-2.9)
A 		38.6
(1.7)
A 		9.5
(-2)
A 		1.6
(-3)
A 		47
avr 16
(-1.4) 		38.7
(3) 		16.3
(-1.3) 		19.7
(-0.7) 		10.1
(-2.5) 		7.5
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.6
(2.3)
A 		1
(-2.7)
A 		0.6
(-3)
A 		9.6
(3)
A 		9
B 4.1
(-1.4)
A 		12.6
(3)
A 		0.9
(-3)
A 		1.5
(-2.7)
A 		12
C 2
(-2.6)
A 		1.6
(-3)
A 		3.3
(-1.1)
A 		7.1
(3)
A 		6
avr 4.9
(1.4) 		5.1
(1.7) 		1.6
(-3) 		6.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.8
(-1.9)
A 		15.7
(3)
A 		5.7
(-1.1)
A 		1.2
(-3)
A 		5.1
(-1.4)
A 		2.8
(-2.3)
A 		15
B 8.9
(3)
A 		7.8
(2.1)
A 		4.9
(-0.2)
A 		4.2
(-0.8)
A 		1.5
(-3)
A 		3.6
(-1.3)
A 		7
C 0.7
(-2.9)
A 		14.8
(3)
A 		0.6
(-3)
A 		7.8
(0.1)
A 		3.1
(-1.9)
A 		0.5
(-3)
A 		14
avr 4.5
(-1.7) 		12.8
(3) 		3.7
(-2.2) 		4.4
(-1.8) 		3.2
(-2.5) 		2.3
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14970
Sequence Type Exemplar sequence
Representative Public ID F37B4.5 NCBI
Target Description F37B4.5 /REP_DB=WormBase Gene ID /WP=CE25875 /GEN=srh-270 /TR=O45162 /GB=AAK18950.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071374(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071374 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-270) (srh-270) mRNA, complete cds. 10/11 None
GENEFINDER00000026936 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2858689:2869430:-1 10/11 None
F37B4.5 ENSEMBL cdna:known chromosome:CEL140:V:2859957:2861432:-1 gene:F37B4.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026928 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2860098-2861432(-) 96.79 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-270
Ensembl F37B4.5
Entrez Gene 185413 Entrez gene
SwissProt O45162 EMBL-EBI
WormBase CE35970 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18950 Serpentine receptor, class h protein 270 [Caenorhabditis elegans] ref|NP_503775.2| Serpentine Receptor, class H family member (srh-270) [Caenorhabditis elegans] 0.0
blast G88979 protein F37B4.5 [imported] - Caenorhabditis elegans 0.0
blast AAK18949 Serpentine receptor, class h protein 241 [Caenorhabditis elegans] ref|NP_503778.1| Serpentine Receptor, class H family member (srh-241) [Caenorhabditis elegans] 0.0
blast G88979 protein F37B4.5 [imported] - Caenorhabditis elegans 1.0E-174
blast G88978 protein F37B4.6 [imported] - Caenorhabditis elegans 1.0E-133
blast NP_503718 Serpentine Receptor, class H family member (srh-271) [Caenorhabditis elegans] gb|AAF60378.2| Serpentine receptor, class h protein 271 [Caenorhabditis elegans] 1.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.1E-87
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.3E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503775.2 7 20-39,59-81,96-118,139-158,195-217,248-270,274-296
F37B4.5 7 20-39,59-81,96-118,139-158,195-217,248-270,274-296
GENEFINDER00000026936 15 20-42,62-84,99-119,140-157,202-224,245-267,277-299,411-430,467-489,520-542,546-568,580-602,617-639,684-706,734-756
Sequence
Target Sequence 
>C. ELEGANS:191500_AT
gaagttccattctgacacttttcgaaaaccgttacttcctaatgtttgccaaacactcca
gttggcggaactatcgtcatccatttctaataatcaactacataatttcttccgtttacg
ccatgcctgctttcctcacaattcctgatcagaaacaagctgttgcgaaagttttaaata
cacttccaaatgtatcgaaagaaattcgaaatgcaccgatttttgttttagcaacagatt
ttcgattgctagtcataacggtatcacttgtggcggtgttgcttgttggagaatcattat
tttttgttaaattattattttttaacatgagaaaacggacgagaagaatggcgacatctc
agtatactttgaacttgcaacggaaatttttaagagcaatttatatacagggtcagtgca
ccatttctcctgctctcagccccggtggcttatttgttcactacaatttatttcaacttc
tatcaccaagtggccaacaatttttgctcacttttacttgcagttcatggctcttcatcg
tcaatattcctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTCCATTCTGACACTTTTCGA 463 337 344 Antisense
GTTGGCGGAACTATCGTCATCCATT 121 435 404 Antisense
TACATAATTTCTTCCGTTTACGCCA 317 643 442 Antisense
GTCATAACGGTATCACTTGTGGCGG 410 465 595 Antisense
CTTGTGGCGGTGTTGCTTGTTGGAG 596 217 610 Antisense
GAATGGCGACATCTCAGTATACTTT 443 333 689 Antisense
ATACAGGGTCAGTGCACCATTTCTC 585 23 748 Antisense
TCTCAGCCCCGGTGGCTTATTTGTT 16 613 777 Antisense
AATTTATTTCAACTTCTATCACCAA 336 175 808 Antisense
TTACTTGCAGTTCATGGCTCTTCAT 495 683 857 Antisense
GCTCTTCATCGTCAATATTCCTGAT 359 301 873 Antisense
Sequence Source Affymetrix Proprietary Database