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[191499_at] 7TM chemoreceptor, srh family

Description F10G2.8 /REP_DB=WormBase Gene ID /WP=CE24895 /GEN=srh-187 /TR=Q22959 /GB=AAG24063.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 4grp_high_8_8 > 05      6grp_total > 20      4grp_total > 11      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 37.4
(-3)
A 		43.6
(-2.4)
A 		55.3
(-1.4)
P 		104.4
(3)
P 		67
B 65.9
(3)
P 		46
(-0.5)
A 		31.4
(-3)
A 		55.4
(1.2)
A 		35
C 39.9
(-2.3)
A 		46.7
(-2)
P 		24.6
(-3)
A 		154.6
(3)
P 		130
avr 47.7
(-2.1) 		45.4
(-2.3) 		37.1
(-3) 		104.8
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 44.5
(1.5)
A 		34
(-0.7)
A 		40.6
(0.7)
P 		51.8
(3)
P 		22.8
(-3)
A 		40.2
(0.6)
A 		29
B 36.3
(-0.8)
A 		42.2
(-0.2)
P 		76.4
(3)
A 		12.5
(-3)
A 		56
(1.1)
P 		20.1
(-2.3)
A 		64
C 18.6
(-3)
A 		83.5
(3)
P 		48
(-0.3)
A 		69.1
(1.7)
P 		25
(-2.4)
P 		22.3
(-2.7)
A 		65
avr 33.1
(-1.8) 		53.2
(2.6) 		55
(3) 		44.5
(0.7) 		34.6
(-1.5) 		27.5
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 13.6
(1.2)
A 		9.5
(-3)
A 		14.5
(2.2)
P 		15.3
(3)
P 		6
B 21
(3)
P 		11.4
(-1.2)
A 		7.3
(-3)
A 		11.8
(-1)
A 		14
C 13.2
(-1.4)
A 		13.4
(-1.4)
P 		8.6
(-3)
A 		26.1
(3)
P 		18
avr 15.9
(1.6) 		11.4
(-2) 		10.1
(-3) 		17.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 8.2
(-1.7)
A 		12.1
(2)
A 		8.8
(-1.2)
P 		13.1
(3)
P 		6.9
(-3)
A 		9.8
(-0.2)
A 		6
B 12.6
(-0.1)
A 		14
(0.3)
P 		18.6
(1.7)
A 		3.3
(-3)
A 		22.7
(3)
P 		7.5
(-1.7)
A 		19
C 6.9
(-3)
A 		25.5
(3)
P 		12.2
(-1.3)
A 		13.9
(-0.7)
P 		8.1
(-2.6)
P 		7.5
(-2.8)
A 		19
avr 9.2
(-2.4) 		17.2
(3) 		13.2
(0.3) 		10.1
(-1.8) 		12.6
(-0.1) 		8.3
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191499_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11580
Sequence Type Exemplar sequence
Representative Public ID F10G2.8 NCBI
Target Description F10G2.8 /REP_DB=WormBase Gene ID /WP=CE24895 /GEN=srh-187 /TR=Q22959 /GB=AAG24063.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072468(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072468 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-187) (srh-187) mRNA, complete cds. 11/11 None
GENEFINDER00000010644 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7340081:7343763:-1 11/11 None
F10G2.8 ENSEMBL cdna:known chromosome:CEL140:V:7341226:7342424:-1 gene:F10G2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7341226-7342425(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-187
Ensembl F10G2.8
Entrez Gene 191887 Entrez gene
SwissProt Q22959 EMBL-EBI
WormBase CE24895 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504869 Serpentine Receptor, class H family member (srh-187) [Caenorhabditis elegans] gb|AAG24063.1| Serpentine receptor, class h protein 187 [Caenorhabditis elegans] 0.0
blast T29868 hypothetical protein F10G2.8 - Caenorhabditis elegans 0.0
blast NP_504869 Serpentine Receptor, class H family member (srh-187) [Caenorhabditis elegans] gb|AAG24063.1| Serpentine receptor, class h protein 187 [Caenorhabditis elegans] 1.0E-136
blast T25496 hypothetical protein C03G6.5 - Caenorhabditis elegans 7.0E-89
blast T25496 hypothetical protein C03G6.5 - Caenorhabditis elegans 6.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.3E-99
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 6.9E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504869.1 7 20-42,55-77,97-119,140-162,199-221,242-264,279-301
F10G2.8 7 20-42,55-77,97-119,140-162,199-221,242-264,279-301
GENEFINDER00000010644 7 84-103,113-135,156-178,215-237,258-280,295-317,357-379
Sequence
Target Sequence 
>C. ELEGANS:191499_AT
attggactgggctgcgatggctatggttaatcacacattacattgcaattggtttaattt
tcagctcttttgcacttttggttccagatcaaaacggtgctttagaatctatatttaaga
agctcccatgtcttcccagtaatttctacaaagtatcaatgtttgtcttagctgaagatt
atacttatcatttttgggcatgctttttcatattttctacgaccagtacagaggtgttca
catttgtttgttttatttgtatgactttttcgcaacaaaacagaagaataacaacatcct
caagaactttaaaccttaagaaagctattttcattgcgttaattatccaaatgagtgtaa
atgcatttcttcacttgatcccacttttatatgcattcatctcaacggtttatacgtatt
ataatcaaaaaatgatgaactggtgcacgataatcatatcaatgcacggatttgtgagca
ctcttgtgatgctccttgtacataaaccatatcgagatacgcttttgggattgatgaaac
gacgaagttcgcgaagtcagtcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGACTGGGCTGCGATGGCTATG 138 3 413 Antisense
TCAGCTCTTTTGCACTTTTGGTTCC 183 625 473 Antisense
TTTAAGAAGCTCCCATGTCTTCCCA 442 671 526 Antisense
ATGTCTTCCCAGTAATTTCTACAAA 341 49 540 Antisense
AAATGCATTTCTTCACTTGATCCCA 31 121 771 Antisense
CTTGATCCCACTTTTATATGCATTC 224 219 786 Antisense
ATGCATTCATCTCAACGGTTTATAC 407 41 803 Antisense
GCACGGATTTGTGAGCACTCTTGTG 467 313 876 Antisense
ACTCTTGTGATGCTCCTTGTACATA 218 101 892 Antisense
TCGAGATACGCTTTTGGGATTGATG 336 601 924 Antisense
GACGAAGTTCGCGAAGTCAGTCAAC 349 379 953 Antisense
Sequence Source Affymetrix Proprietary Database