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[191498_at] 7TM chemoreceptor, str family

Description C09H5.4 /REP_DB=WormBase Gene ID /WP=CE08046 /GEN=str-143 /TR=O16329 /GB=AAB65389.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 83      4grp_total > 08      6grp_cgc > 64      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 20.6
(-2)
A 		3.5
(-3)
A 		34.1
(-1.3)
A 		110.1
(3)
P 		107
B 32.5
(-3)
A 		55.8
(2.2)
A 		43.2
(-0.6)
A 		59.5
(3)
P 		27
C 7.2
(-3)
A 		10.9
(-2.7)
A 		36.8
(-0.6)
A 		81.3
(3)
P 		74
avr 20.1
(-3) 		23.4
(-2.7) 		38
(-1.3) 		83.6
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 2.9
(-3)
A 		7.1
(-2.3)
A 		22.1
(0)
A 		12.9
(-1.4)
A 		39
(2.7)
A 		40.7
(3)
A 		38
B 32.8
(0.2)
A 		38.7
(0.9)
A 		21.9
(-1)
A 		4.3
(-3)
A 		57.2
(3)
A 		32.4
(0.2)
A 		53
C 6.4
(-2.9)
A 		61.4
(1.9)
A 		5.1
(-3)
A 		74
(3)
A 		23.3
(-1.4)
A 		8.4
(-2.7)
A 		69
avr 14
(-3) 		35.7
(2) 		16.4
(-2.4) 		30.4
(0.8) 		39.8
(3) 		27.2
(0.1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.5
(-0.4)
A 		0.8
(-3)
A 		8.9
(0.2)
A 		16.1
(3)
P 		15
B 10.4
(-2.4)
A 		13.8
(3)
A 		10
(-3)
A 		12.7
(1.3)
P 		4
C 2.4
(-3)
A 		3.1
(-2.6)
A 		12.8
(2.5)
A 		13.7
(3)
P 		11
avr 6.8
(-2.3) 		5.9
(-3) 		10.6
(0.4) 		14.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.5
(-1.9)
A 		4.8
(-0.7)
A 		3.3
(-1.5)
A 		11.8
(3)
A 		9.9
(2)
A 		11
B 11.4
(-0.2)
A 		12.9
(0.2)
A 		5.3
(-1.9)
A 		1.1
(-3)
A 		23.2
(3)
A 		12.1
(-0)
A 		22
C 2.4
(-2.6)
A 		18.7
(3)
A 		1.3
(-3)
A 		14.9
(1.7)
A 		7.5
(-0.9)
A 		2.8
(-2.5)
A 		17
avr 4.8
(-2.4) 		11.4
(1.4) 		3.8
(-3) 		6.4
(-1.5) 		14.2
(3) 		8.3
(-0.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191498_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12303
Sequence Type Exemplar sequence
Representative Public ID C09H5.4 NCBI
Target Description C09H5.4 /REP_DB=WormBase Gene ID /WP=CE08046 /GEN=str-143 /TR=O16329 /GB=AAB65389.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072680(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072680 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-143) (str-143) mRNA, complete cds. 11/11 None
GENEFINDER00000035882 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8070839:8074356:-1 9/11 None
C09H5.4 ENSEMBL cdna:known chromosome:CEL140:V:8070839:8072320:-1 gene:C09H5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035871 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8070839-8072321(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-143
Ensembl C09H5.4
Entrez Gene 192013 Entrez gene
SwissProt O16329 EMBL-EBI
WormBase CE08046 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65389 Seven tm receptor protein 143 [Caenorhabditis elegans] ref|NP_505081.1| Seven TM Receptor family member (str-143) [Caenorhabditis elegans] 0.0
blast AAB65390 Seven tm receptor protein 144 [Caenorhabditis elegans] ref|NP_505082.1| Seven TM Receptor family member (str-144) [Caenorhabditis elegans] 1.0E-161
blast AAB65389 Seven tm receptor protein 143 [Caenorhabditis elegans] ref|NP_505081.1| Seven TM Receptor family member (str-143) [Caenorhabditis elegans] 1.0E-161
blast CAE66143 Hypothetical protein CBG11373 [Caenorhabditis briggsae] 1.0E-148
blast AAB65390 Seven tm receptor protein 144 [Caenorhabditis elegans] ref|NP_505082.1| Seven TM Receptor family member (str-144) [Caenorhabditis elegans] 1.0E-132
blast CAE66143 Hypothetical protein CBG11373 [Caenorhabditis briggsae] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.3E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505081.1 7 10-32,45-67,92-111,132-154,202-224,248-270,285-307
C09H5.4 7 10-32,45-67,92-111,132-154,202-224,248-270,285-307
GENEFINDER00000035882 11 20-42,66-88,136-158,182-204,219-241,262-284,294-316,344-366,381-403,481-503,513-535
Sequence
Target Sequence 
>C. ELEGANS:191498_AT
atctgaccttattattcattccttgtattgtttgctttgttggttgcgttacttgcgtct
attttggaatgcacaatactgtggaaaaacaaaaatttatgagagacgtgatgtttgaga
actatgatgttgatttgggcagggaatcatttatcgcagctttttattggtcatatgata
aaaatgggtctcgaattttccgctttcgggataccattgcggcttctggatgtatattag
taatggtggcatgcttctccacaatactgtattgtgctttcaaaatctacatcagactca
aaagtgctcaagcattgatgagtactaaaacgagagaacttaaccgacagctgtttatca
ctctcacttttcagacactttttccatttttcatgatgtattgccctgttggttctttga
tttcttttccatttcttgaaattgaagttgggaaatttggtaattacactggcgcagctg
ccggaatttacccagctttagaacctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGACCTTATTATTCATTCCTTG 292 33 404 Antisense
TGTTGGTTGCGTTACTTGCGTCTAT 569 561 441 Antisense
GGGAATCATTTATCGCAGCTTTTTA 562 493 545 Antisense
GAATTTTCCGCTTTCGGGATACCAT 606 323 596 Antisense
TACCATTGCGGCTTCTGGATGTATA 305 649 615 Antisense
GTAATGGTGGCATGCTTCTCCACAA 135 463 643 Antisense
ACTTAACCGACAGCTGTTTATCACT 284 101 741 Antisense
ATTGCCCTGTTGGTTCTTTGATTTC 362 7 803 Antisense
TCTTTGATTTCTTTTCCATTTCTTG 359 615 817 Antisense
ATTACACTGGCGCAGCTGCCGGAAT 572 5 866 Antisense
GAATTTACCCAGCTTTAGAACCTCT 97 325 887 Antisense
Sequence Source Affymetrix Proprietary Database