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[191496_s_at] ABC transporters (2 domains)

Description T27E9.7 /REP_DB=WormBase Gene ID /WP=CE18971 /TR=Q9XTD9 /GB=CAA21772.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ABC transporters (2 domains)
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 0      6grp_total > 39      4grp_total > 04      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6402
1 2 3 4 range
A 2708
(-1.5)
P 		1130.6
(-3)
P 		1228.8
(-2.9)
P 		7532.6
(3)
P 		6402
B 2595.1
(-1.5)
P 		1203
(-3)
P 		1372.6
(-2.8)
P 		6737.6
(3)
P 		5535
C 2224.8
(-2.2)
P 		1388.9
(-3)
P 		1417.9
(-3)
P 		7473.4
(3)
P 		6085
avr 2509.3
(-1.7) 		1240.8
(-3) 		1339.8
(-2.9) 		7247.9
(3) 		6007

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2093
1 2 3 4 5 6 range
A 1452.6
(-0.3)
P 		1735.8
(1.2)
P 		964.6
(-3)
P 		1403
(-0.6)
P 		1371.9
(-0.8)
P 		2066.5
(3)
P 		1102
B 1660.8
(3)
P 		1398.3
(1.1)
P 		830.3
(-3)
P 		1641.7
(2.9)
P 		1353.9
(0.8)
P 		1571.1
(2.4)
P 		831
C 2923.2
(3)
P 		1277.5
(-1.8)
P 		1385.9
(-1.5)
P 		871.2
(-3)
P 		1777.1
(-0.4)
P 		1401
(-1.5)
P 		2052
avr 2012.2
(3) 		1470.5
(-0.4) 		1060.3
(-3) 		1305.3
(-1.5) 		1501
(-0.2) 		1679.5
(0.9) 		952
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1190
1 2 3 4 range
A 986
(2.2)
P 		245.4
(-3)
P 		321.2
(-2.5)
P 		1102.6
(3)
P 		857
B 827.6
(-0.2)
P 		297.1
(-3)
P 		318.1
(-2.9)
P 		1435.8
(3)
P 		1139
C 736.5
(-0.6)
P 		399.3
(-3)
P 		494.2
(-2.3)
P 		1260.1
(3)
P 		861
avr 850
(0.4) 		313.9
(-3) 		377.8
(-2.6) 		1266.2
(3) 		952

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 908
1 2 3 4 5 6 range
A 267.8
(-2.2)
P 		617.4
(3)
P 		210.1
(-3)
P 		355.8
(-0.9)
P 		414
(0)
P 		503.1
(1.3)
P 		407
B 577.9
(2.9)
P 		465.4
(1.1)
P 		201.6
(-3)
P 		434.8
(0.6)
P 		550.1
(2.4)
P 		585.8
(3)
P 		384
C 1083.5
(3)
P 		389.8
(-1.6)
P 		352.7
(-1.8)
P 		175.2
(-3)
P 		575
(-0.4)
P 		469
(-1.1)
P 		908
avr 643.1
(3) 		490.9
(0.6) 		254.8
(-3) 		321.9
(-2) 		513
(1) 		519.3
(1.1) 		388
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191496_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6228
Sequence Type Exemplar sequence
Representative Public ID T27E9.7 NCBI
Target Description T27E9.7 /REP_DB=WormBase Gene ID /WP=CE18971 /TR=Q9XTD9 /GB=CAA21772.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ABC transporters (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067378(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067378 NCBI Caenorhabditis elegans T27E9.7 (T27E9.7) mRNA, complete cds. 11/11 None
T27E9.7.2 ENSEMBL cdna:known chromosome:CEL140:III:13457212:13462209:-1 gene:T27E9.7 11/11 A 
T27E9.7.1 ENSEMBL cdna:known chromosome:CEL140:III:13457212:13461754:-1 gene:T27E9.7 11/11 A 
T27E9.7.3 ENSEMBL cdna:known chromosome:CEL140:III:13457281:13461754:-1 gene:T27E9.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025203 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13457714-13461719(-) 100.0 100.0
Public Domain and Genome References
Gene Title ABC transporters (2 domains)
Ensembl T27E9.7
Entrez Gene 176771 Entrez gene
SwissProt Q9XTD9 EMBL-EBI
WormBase CE18971 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247593_AT ABC transporter family protein at
CANINE:1584907_AT similar to ATP-binding cassette, sub-family F, member 2 isoform b cfa
CANINE_2:CFA.11479.1.A1_AT similar to ATP-binding cassette, sub-family F, member 2 isoform b cfa
CANINE_2:CFA.17645.2.S1_S_AT similar to ATP-binding cassette, sub-family F, member 2 isoform b cfa
CANINE_2:CFA.8004.1.A1_AT similar to ATP-binding cassette, sub-family F, member 2 isoform b cfa
CANINE_2:CFAAFFX.16833.1.S1_AT similar to ATP-binding cassette, sub-family F, member 2 isoform b cfa
CANINE_2:CFAAFFX.8212.1.S1_AT similar to ATP-binding cassette, sub-family F, member 2 isoform b cfa
CANINE_2:CFAAFFX.8212.1.S1_S_AT similar to ATP-binding cassette, sub-family F, member 2 isoform b cfa
DROSOPHILA_2:1639700_S_AT dm
DROSGENOME1:153481_AT dm
CHICKEN:GGAAFFX.13234.1.S1_AT ATP-binding cassette, sub-family F (GCN20), member 2 gga
CHICKEN:GGAAFFX.8504.2.S1_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 gga
CHICKEN:GGAAFFX.8504.3.S1_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 gga
CHICKEN:GGAAFFX.8504.4.S1_AT ATP-binding cassette, sub-family F (GCN20), member 2 gga
HG-U133A:207622_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133_PLUS_2:207622_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A_2:207622_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A:209247_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133_PLUS_2:209247_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-FOCUS:209247_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A_2:209247_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133_PLUS_2:209246_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A:209246_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A_2:209246_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HU35KSUBA:U66678_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HU35KSUBD:RC_AA427460_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A:207623_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133_PLUS_2:207623_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A_2:207623_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
U133_X3P:G12804500_3P_A_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
U133_X3P:G10947136_3P_X_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
U133_X3P:G10947136_3P_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
U133_X3P:G10179833_3P_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
U133_X3P:HS.153612.2.S1_3P_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A_2:214232_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133_PLUS_2:214232_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A:214232_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U95AV2:31878_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HU35KSUBA:W26980_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
MG-U74AV2:102010_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MU11KSUBB:MSA.3750.0_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MU11KSUBB:MSA.9318.0_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MG-U74AV2:93845_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MG-U74BV2:164938_F_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MG-U74CV2:168664_R_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MG-U74CV2:167611_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MG-U74CV2:169454_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MOE430A:1423863_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MOUSE430A_2:1423863_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MOUSE430_2:1423863_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MG-U74CV2:168539_AT ATP-binding cassette, sub-family F (GCN20), member 2 (Abcf2), mRNA mm
MU19KSUBA:TC19960_AT ATP-binding cassette, sub-family F (GCN20), member 2 (Abcf2), mRNA mm
MU19KSUBB:TC31431_AT ATP-binding cassette, sub-family F (GCN20), member 2 (Abcf2), mRNA mm
RG-U34C:RC_AI235192_AT ATP-binding cassette, sub-family F (GCN20), member 2 (predicted) rn
RAE230A:1389608_AT ATP-binding cassette, sub-family F (GCN20), member 2 (predicted) rn
RAT230_2:1389608_AT ATP-binding cassette, sub-family F (GCN20), member 2 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21772 Hypothetical protein T27E9.7 [Caenorhabditis elegans] emb|CAB04880.1| Hypothetical protein T27E9.7 [Caenorhabditis elegans] ref|NP_499779.1| T27E9.7 [Caenorhabditis elegans] 0.0
blast CAE73687 Hypothetical protein CBG21198 [Caenorhabditis briggsae] 0.0
blast AAC46845 unknown 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 6.0E-38
Pfam IPR003439 EMBL-EBI ABC transporter 3.5E-39
Sequence
Target Sequence 
>C. ELEGANS:191496_S_AT
aatcgacactgttgaagcttctctgtactgatgtgatgccaactgacggattgatcagaa
gacattcgcattgtaagattggacgttatcaccagcatctccacgaagagcttccattgg
acttatcggctcttgaattcatgatgaaggagttcccagatgtcaaggaaaaggaagaaa
tgagaaagattgtcggaagatatggaattactggaagagaacaggtgtgcccgatgaaac
agctatctgacggtcaacgttgtcgtgtatcgttcgcctggttggcttggcagcaaccac
atcttctacttcttgacgaacctactaatcacttggatatggaatccattgatgcattgg
ccgaggctatcaactgcttcccaggaggaatgattcttgtttctcacgacttccgtctcg
tttcgcaggtcgccgaagaagtttgggtgtgtgataaccaaggaattctgaagtgggacg
gtgacatcttctcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGACACTGTTGAAGCTTCTCTG 284 169 1313 Antisense
GCTTCTCTGTACTGATGTGATGCCA 600 305 1329 Antisense
GATTGGACGTTATCACCAGCATCTC 199 435 1389 Antisense
ACCAGCATCTCCACGAAGAGCTTCC 157 87 1403 Antisense
TTCCATTGGACTTATCGGCTCTTGA 317 701 1424 Antisense
GACGGTCAACGTTGTCGTGTATCGT 138 377 1561 Antisense
ACATCTTCTACTTCTTGACGAACCT 106 107 1611 Antisense
GCATTGGCCGAGGCTATCAACTGCT 135 307 1666 Antisense
AATGATTCTTGTTTCTCACGACTTC 277 165 1701 Antisense
TCTCGTTTCGCAGGTCGCCGAAGAA 445 609 1728 Antisense
AAGTGGGACGGTGACATCTTCTCAT 199 157 1783 Antisense
Sequence Source Affymetrix Proprietary Database