[Home] | [Total List]

[191495_s_at] ADP/ATP carrier protein like

Description T20D3.5 /REP_DB=WormBase Gene ID /WP=CE03673 /TR=O01256 /GB=CAA92487.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=ADP-ATP carrier protein like
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_highest_nonorm > 74      6grp_total > 66      4grp_total > 36      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 681.3
(1.1)
P 		756
(3)
P 		518
(-3)
P 		682.1
(1.1)
P 		238
B 656.2
(3)
P 		592.2
(0)
P 		526.1
(-3)
P 		651.9
(2.8)
P 		130
C 707.8
(3)
P 		704.2
(2.8)
P 		569.9
(-3)
P 		631.9
(-0.3)
P 		138
avr 681.8
(2.9) 		684.1
(3) 		538
(-3) 		655.3
(1.8) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 331
1 2 3 4 5 6 range
A 770.3
(0.7)
P 		757.8
(0.4)
P 		687.2
(-1.6)
P 		813.7
(1.9)
P 		633.7
(-3)
P 		855.1
(3)
P 		221
B 614.6
(-0.5)
P 		706.1
(2)
P 		524.1
(-3)
P 		632.3
(-0)
P 		699.6
(1.8)
P 		744
(3)
P 		220
C 590
(-3)
P 		687.4
(0.3)
P 		769.1
(3)
P 		638.1
(-1.4)
P 		709.5
(1)
P 		672.7
(-0.2)
P 		179
avr 658.3
(-3) 		717.1
(0.6) 		660.1
(-2.9) 		694.7
(-0.8) 		680.9
(-1.6) 		757.3
(3) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 248.1
(3)
P 		164.1
(-0.4)
P 		135.4
(-1.6)
P 		99.8
(-3)
P 		148
B 209.3
(3)
P 		146.3
(-1.3)
P 		121.9
(-3)
P 		138.9
(-1.8)
P 		87
C 234.3
(3)
P 		202.5
(1.5)
P 		198.6
(1.3)
P 		106.6
(-3)
P 		128
avr 230.6
(3) 		171
(-0.1) 		152
(-1.1) 		115.1
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 142
(-3)
P 		269.5
(3)
P 		149.7
(-2.6)
P 		206.4
(0)
P 		191.2
(-0.7)
P 		208.2
(0.1)
P 		128
B 213.9
(0.3)
P 		235
(1.1)
P 		127.3
(-3)
P 		167.5
(-1.5)
P 		284.2
(3)
P 		277.4
(2.7)
P 		157
C 218.7
(2.4)
P 		209.7
(1.8)
P 		195.8
(1)
P 		128.3
(-3)
P 		229.6
(3)
P 		225.2
(2.7)
P 		101
avr 191.5
(-0.5) 		238.1
(3) 		157.6
(-3) 		167.4
(-2.3) 		235
(2.8) 		236.9
(2.9) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191495_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8974
Sequence Type Exemplar sequence
Representative Public ID T20D3.5 NCBI
Target Description T20D3.5 /REP_DB=WormBase Gene ID /WP=CE03673 /TR=O01256 /GB=CAA92487.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=ADP-ATP carrier protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069241 NCBI Caenorhabditis elegans T20D3.5 (T20D3.5) mRNA, complete cds. 11/11 None
SNAP00000040160 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9336358:9338255:1 11/11 None
GENEFINDER00000040169 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9337288:9338255:1 11/11 None
T20D3.5 ENSEMBL cdna:known chromosome:CEL140:IV:9337040:9338524:1 gene:T20D3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9337293-9338261(+) 100.0 100.0
Public Domain and Genome References
Gene Title ADP/ATP carrier protein like
Ensembl T20D3.5
Entrez Gene 177763 Entrez gene
SwissProt O01256 EMBL-EBI
WormBase CE03673 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1631054_S_AT dm
DROSGENOME1:141740_AT dm
HG-U133_PLUS_2:232092_AT mitochondrial carrier triple repeat 1 hs
HG-U133B:232092_AT mitochondrial carrier triple repeat 1 hs
HU35KSUBD:RC_AA453578_AT mitochondrial carrier triple repeat 1 hs
U133_X3P:HS.274549.0.A1_3P_AT mitochondrial carrier triple repeat 1 hs
HG-U95B:47443_AT mitochondrial carrier triple repeat 1 hs
HG-U95D:85572_AT mitochondrial carrier triple repeat 1 hs
HG-U133_PLUS_2:214126_AT Mitochondrial carrier triple repeat 1 hs
HG-U133A_2:214126_AT Mitochondrial carrier triple repeat 1 hs
HG-U133A:214126_AT Mitochondrial carrier triple repeat 1 hs
HU35KSUBC:RC_N47953_AT Mitochondrial carrier triple repeat 1 hs
HU35KSUBD:RC_H99206_AT Mitochondrial carrier triple repeat 1 hs
U133_X3P:HS.46791.0.A1_3P_AT Mitochondrial carrier triple repeat 1 hs
U133_X3P:HS.152448.0.A1_3P_AT Mitochondrial carrier triple repeat 1 hs
U133_X3P:HS.11173.2.A1_3P_AT Mitochondrial carrier triple repeat 1 hs
HG-U133_PLUS_2:227665_AT Mitochondrial carrier triple repeat 1 hs
HG-U133B:227665_AT Mitochondrial carrier triple repeat 1 hs
HG-U133_PLUS_2:238574_AT Mitochondrial carrier triple repeat 1 hs
HG-U133B:238574_AT Mitochondrial carrier triple repeat 1 hs
HG-U95B:45625_AT Mitochondrial carrier triple repeat 1 hs
HG-U95D:91395_AT Mitochondrial carrier triple repeat 1 hs
MU11KSUBA:AA403448_S_AT mitochondrial carrier triple repeat 1 mm
MU11KSUBA:AA268619_S_AT mitochondrial carrier triple repeat 1 mm
MG-U74AV2:97410_AT mitochondrial carrier triple repeat 1 mm
MG-U74CV2:129294_AT mitochondrial carrier triple repeat 1 mm
MG-U74BV2:164855_AT mitochondrial carrier triple repeat 1 mm
MOE430A:1454712_AT mitochondrial carrier triple repeat 1 mm
MOUSE430A_2:1454712_AT mitochondrial carrier triple repeat 1 mm
MOUSE430_2:1454712_AT mitochondrial carrier triple repeat 1 mm
MOE430A:1433816_AT mitochondrial carrier triple repeat 1 mm
MOUSE430A_2:1433816_AT mitochondrial carrier triple repeat 1 mm
MOUSE430_2:1433816_AT mitochondrial carrier triple repeat 1 mm
MU19KSUBB:TC26403_AT Mitochondrial carrier triple repeat 1 (Mcart1), mRNA mm
MU19KSUBB:TC26432_AT Mitochondrial carrier triple repeat 1 (Mcart1), mRNA mm
RAE230B:1395621_AT similar to Mitochondrial carrier triple repeat 1 rn
RAT230_2:1395621_AT similar to Mitochondrial carrier triple repeat 1 rn
RG-U34A:RC_H33101_AT mitochondrial carrier triple repeat 1 (predicted) rn
RAE230A:1386478_AT mitochondrial carrier triple repeat 1 (predicted) rn
RAT230_2:1386478_AT mitochondrial carrier triple repeat 1 (predicted) rn
RAE230A:1379456_AT mitochondrial carrier triple repeat 1 (predicted) rn
RAT230_2:1379456_AT mitochondrial carrier triple repeat 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92487 Hypothetical protein T20D3.5 [Caenorhabditis elegans] ref|NP_501642.1| T20D3.5 [Caenorhabditis elegans] 1.0E-124
blast CAE74044 Hypothetical protein CBG21695 [Caenorhabditis briggsae] 1.0E-112
blast XP_796780 PREDICTED: similar to mitochondrial carrier triple repeat 1 [Strongylocentrotus purpuratus] 2.0E-58
blast NP_219480 mitochondrial carrier triple repeat 1 [Homo sapiens] emb|CAC22316.1| mitochondrial carrier triple repeat 1 [Homo sapiens] gb|AAH08500.1| Mitochondrial carrier triple repeat 1 [Homo sapiens] sp|Q9H1U9|MCAR1_HUMAN Mitochondrial carrier triple repeat 9.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 3.9E-6
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 3.3E-5
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 3.9E-6
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 3.3E-5
Sequence
Target Sequence 
>C. ELEGANS:191495_S_AT
tccttaaaatgtccacgttcacctccgaactcttcgttttcaatttgtcacgctcaagct
gcatttctgtcaggagtatgcgaagcaatgctctgcccgctggaacgggttcaagtactt
cttcaaacaacaatatttcatgacaaatttaagaacacattacacactttcaatcgtctc
cgcgactatggttatcgggaatattatcgaggattttctgttattctcatccgaaatagt
ctttcaaatacaattttcttcactcttcgagatccgttgaaacaaaaaatagtcggaatc
ccacaagctggacgtcttcctgaatcacttcagcaactaattggtgatttcgtagctgga
tctctattgggagcaaccatttctacagcatttttcccattaggtgttatcaagaatcat
atgcaagcgaaggttggtgtcaaatacgaaagtggtttcaaagtatttcgtgatgtgtgg
caacttcgaaatcgttcgcttcgtggtctttatttaggtgttcatctaaatttcactcga
tccttagtagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTAAAATGTCCACGTTCACCTC 125 591 67 Antisense
TTCAATTTGTCACGCTCAAGCTGCA 139 685 105 Antisense
ACATTACACACTTTCAATCGTCTCC 142 105 223 Antisense
TCAATCGTCTCCGCGACTATGGTTA 272 633 236 Antisense
AATACAATTTTCTTCACTCTTCGAG 32 173 313 Antisense
AGTCGGAATCCCACAAGCTGGACGT 352 59 357 Antisense
TGGACGTCTTCCTGAATCACTTCAG 262 547 375 Antisense
GGTGATTTCGTAGCTGGATCTCTAT 107 501 409 Antisense
AACCATTTCTACAGCATTTTTCCCA 58 147 441 Antisense
TCGTTCGCTTCGTGGTCTTTATTTA 73 587 558 Antisense
AATTTCACTCGATCCTTAGTAGCAT 397 173 595 Antisense
Sequence Source Affymetrix Proprietary Database