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[191494_s_at] acetate utilisation protein

Description ZK1320.9 /REP_DB=WormBase Gene ID /WP=CE01707 /TR=Q09657 /GB=CAA87047.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=acetate utilisation protein
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 62      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 46      6grp_total > 62      4grp_total > 14      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1102
1 2 3 4 range
A 2348.9
(2.5)
P 		1447.5
(-2.8)
P 		1420.3
(-3)
P 		2427.9
(3)
P 		1008
B 1946.7
(1.8)
P 		1325.7
(-3)
P 		1439.4
(-2.1)
P 		2097.9
(3)
P 		772
C 1932.5
(0.7)
P 		1377.9
(-3)
P 		1567.8
(-1.7)
P 		2278.8
(3)
P 		901
avr 2076
(1.7) 		1383.7
(-3) 		1475.8
(-2.4) 		2268.2
(3) 		885

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1752
1 2 3 4 5 6 range
A 2187.5
(-3)
P 		2945.9
(0.3)
P 		3275.8
(1.7)
P 		3569.5
(3)
P 		2686.5
(-0.8)
P 		2846.8
(-0.1)
P 		1382
B 2460.9
(-3)
P 		2772.6
(-0.6)
P 		2985.9
(1.1)
P 		3224.3
(3)
P 		2842.4
(-0)
P 		2521.3
(-2.5)
P 		763
C 2191.6
(-3)
P 		2660
(-1.4)
P 		3939.8
(3)
P 		2627.3
(-1.5)
P 		2740.2
(-1.1)
P 		2637.6
(-1.5)
P 		1748
avr 2280
(-3) 		2792.8
(-0.3) 		3400.5
(3) 		3140.4
(1.6) 		2756.4
(-0.4) 		2668.6
(-0.9) 		1121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 541
1 2 3 4 range
A 855.3
(3)
P 		314.2
(-3)
P 		371.3
(-2.4)
P 		355.4
(-2.5)
P 		541
B 620.8
(3)
P 		327.4
(-3)
P 		333.6
(-2.9)
P 		447.1
(-0.6)
P 		293
C 639.7
(3)
P 		396.2
(-2.7)
P 		546.4
(0.8)
P 		384.2
(-3)
P 		256
avr 705.3
(3) 		345.9
(-3) 		417.1
(-1.8) 		395.6
(-2.2) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 752
1 2 3 4 5 6 range
A 403.3
(-3)
P 		1047.7
(3)
P 		713.4
(-0.1)
P 		905.3
(1.7)
P 		810.7
(0.8)
P 		693.1
(-0.3)
P 		644
B 856.3
(-1.2)
P 		922.9
(-0.2)
P 		725.1
(-3)
P 		854
(-1.2)
P 		1154.8
(3)
P 		940.2
(0)
P 		430
C 812.3
(0.6)
P 		811.6
(0.6)
P 		1002.8
(3)
P 		528.4
(-3)
P 		886.7
(1.5)
P 		883
(1.5)
P 		474
avr 690.6
(-3) 		927.4
(2.5) 		813.8
(-0.2) 		762.6
(-1.3) 		950.7
(3) 		838.8
(0.4) 		260
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191494_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3527
Sequence Type Exemplar sequence
Representative Public ID ZK1320.9 NCBI
Target Description ZK1320.9 /REP_DB=WormBase Gene ID /WP=CE01707 /TR=Q09657 /GB=CAA87047.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=acetate utilisation protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063689(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063689 NCBI Caenorhabditis elegans ZK1320.9 (ZK1320.9) mRNA, complete cds. 11/11 None
SNAP00000038590 ENSEMBL cdna:SNAP chromosome:CEL140:II:9684151:9686622:-1 11/11 None
GENEFINDER00000038600 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9684151:9686622:-1 11/11 None
ZK1320.9.2 ENSEMBL cdna:known chromosome:CEL140:II:9684007:9686631:-1 gene:ZK1320.9 11/11 None
ZK1320.9.1 ENSEMBL cdna:known chromosome:CEL140:II:9684007:9686624:-1 gene:ZK1320.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9684147-9686619(-) 100.0 100.0
Public Domain and Genome References
Gene Title acetate utilisation protein
Ensembl ZK1320.9
Entrez Gene 174526 Entrez gene
SwissProt Q09657 EMBL-EBI
WormBase CE01707 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6084 acetyl-CoA metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87047 Hypothetical protein ZK1320.9 [Caenorhabditis elegans] ref|NP_496090.1| ZK1320.9 [Caenorhabditis elegans] 0.0
blast CAE57991 Hypothetical protein CBG01054 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003702 EMBL-EBI Acetyl-CoA hydrolase/transferase 1.7E-71
Sequence
Target Sequence 
>C. ELEGANS:191494_S_AT
tgtttcctcgtttgcttttggaacaaaggaattttataagaaaatcgataataatccaga
gttttattttgccccatgcgacttcaccaatcatatcgacatcgtccgccgtaacagtaa
aatgacatcaatcaactcagcgattgaaatcgatttgacgggacaaatcgtatcggattc
gattggacgcaattttttcagtggattcggtggacaagtcgactttatggctgccagtcc
acacggatttgatggacttggaaaggcgattattgcattaccatcgagaaccactaaggg
acaaacgaaaattgttccattcttgacacagggttctggagtggtcacgacacgtgcaca
tgccagatacatcgttaccgagcatggcatcgccaatctatggggaaaatcaattcgtca
aagagcctatgagttgattcaaatctctcatccggatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTCCTCGTTTGCTTTTGGAACA 539 559 915 Antisense
GACTTCACCAATCATATCGACATCG 42 373 994 Antisense
GACATCGTCCGCCGTAACAGTAAAA 644 367 1012 Antisense
GACGCAATTTTTTCAGTGGATTCGG 623 379 1100 Antisense
GTCGACTTTATGGCTGCCAGTCCAC 540 473 1132 Antisense
TGTTCCATTCTTGACACAGGGTTCT 451 561 1227 Antisense
GTTCTGGAGTGGTCACGACACGTGC 79 443 1247 Antisense
GACACGTGCACATGCCAGATACATC 569 367 1263 Antisense
ACATCGTTACCGAGCATGGCATCGC 431 105 1283 Antisense
CATGGCATCGCCAATCTATGGGGAA 636 209 1297 Antisense
GATTCAAATCTCTCATCCGGATGAT 124 431 1350 Antisense
Sequence Source Affymetrix Proprietary Database