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[191493_at] 7TM chemoreceptor, srh family

Description Y38A10A.3 /REP_DB=WormBase Gene ID /WP=CE26395 /GEN=srh-10 /TR=Q9UAX7 /GB=AAD14744.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 12      4grp_total > 06      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 4
(-2.4)
A 		3.6
(-3)
A 		7.3
(3)
A 		5.7
(0.4)
A 		4
B 5.5
(-2.4)
A 		3.7
(-3)
A 		8.7
(-1.2)
A 		20.6
(3)
A 		17
C 29.3
(3)
A 		2.5
(-3)
A 		2.4
(-3)
A 		27.4
(2.6)
A 		27
avr 12.9
(0.9) 		3.3
(-3) 		6.1
(-1.8) 		17.9
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 18
(1.3)
A 		3.5
(-2.7)
A 		24.2
(3)
A 		2.4
(-3)
A 		3.6
(-2.7)
A 		2.5
(-3)
A 		22
B 23.7
(3)
A 		9.8
(-0.7)
A 		4.6
(-2.1)
A 		15.9
(0.9)
A 		3
(-2.5)
A 		1.3
(-3)
A 		22
C 3.4
(-2.7)
A 		42.6
(3)
A 		10
(-1.7)
A 		2.6
(-2.8)
A 		4
(-2.6)
A 		1.4
(-3)
A 		41
avr 15
(1.7) 		18.6
(3) 		12.9
(1) 		7
(-1.1) 		3.5
(-2.4) 		1.7
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.4
(0.3)
A 		0.8
(-3)
A 		1.9
(3)
A 		0.8
(-3)
A 		1
B 1.8
(-1.5)
A 		0.9
(-3)
A 		2
(-1.1)
A 		4.4
(3)
A 		4
C 9.7
(3)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		4.6
(-0.4)
A 		9
avr 4.3
(3) 		0.8
(-3) 		1.6
(-1.6) 		3.3
(1.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.3
(0.4)
A 		1.2
(-2.2)
A 		5.3
(3)
A 		0.6
(-3)
A 		1.1
(-2.4)
A 		0.6
(-3)
A 		5
B 8.2
(3)
A 		3.3
(-0.8)
A 		1.1
(-2.5)
A 		4.2
(-0.1)
A 		1.2
(-2.5)
A 		0.5
(-3)
A 		8
C 1.2
(-2.7)
A 		13
(3)
A 		2.6
(-2)
A 		0.5
(-3)
A 		1.3
(-2.6)
A 		0.5
(-3)
A 		13
avr 4.2
(1.2) 		5.8
(3) 		3
(-0.2) 		1.8
(-1.5) 		1.2
(-2.2) 		0.5
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191493_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11690
Sequence Type Exemplar sequence
Representative Public ID Y38A10A.3 NCBI
Target Description Y38A10A.3 /REP_DB=WormBase Gene ID /WP=CE26395 /GEN=srh-10 /TR=Q9UAX7 /GB=AAD14744.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072170(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072170 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-10) (srh-10) mRNA, complete cds. 11/11 None
Y38A10A.3 ENSEMBL cdna:known chromosome:CEL140:V:6068101:6069683:-1 gene:Y38A10A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035779 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6068100-6069683(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-10
Ensembl Y38A10A.3
Entrez Gene 191844 Entrez gene
SwissProt Q9UAX7 EMBL-EBI
WormBase CE26395 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14744 Serpentine receptor, class h protein 10 [Caenorhabditis elegans] ref|NP_504571.1| Serpentine Receptor, class H family member (srh-10) [Caenorhabditis elegans] 0.0
blast CAE64519 Hypothetical protein CBG09257 [Caenorhabditis briggsae] 1.0E-118
blast CAE64548 Hypothetical protein CBG09293 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504571.1 8 21-43,58-80,87-109,119-138,151-170,213-235,255-277,290-312
Y38A10A.3 8 21-43,58-80,87-109,119-138,151-170,213-235,255-277,290-312
Sequence
Target Sequence 
>C. ELEGANS:191493_AT
tctgatagttttctcttcttgcacgttttgtttcctgttgcttggtattacaggaatgtt
tgatcaaactgctcataaagagaaattagagatcatcaacgaatttcccgaattaacctg
tacgtcggctgtaacacttccgaaatcttcaacagatattaaacctattcacttatttaa
tgcctctgtttttgtgtcaataattgttggaagtattctttgtgcaacaatgggatcggt
atcgttattggctcttcgagaaatggttagagaatgcagttcatcgttgaggacaatttc
gatgcacagaggatttctgattagtttattctgtcaaattggagtacatggagttatgtt
aggattcccattgtttgtttatatgacttcaatagtttttcattttgatggaaatgatgt
tggctacgtggcaatcgtgctagcttctcttcatggagcaatgagcacactggcgatgat
tgtgttcacccgaccgttgctcaatttcgctagatcaaagcttcactcaattttctttcc
acgaaatatgtcgattcgtgacgtgtctttcctctcaagcagtcaatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGATAGTTTTCTCTTCTTGCACG 399 609 462 Antisense
AACCTGTACGTCGGCTGTAACACTT 133 147 576 Antisense
TAATGCCTCTGTTTTTGTGTCAATA 232 637 639 Antisense
GATCGGTATCGTTATTGGCTCTTCG 584 417 695 Antisense
GTTGGCTACGTGGCAATCGTGCTAG 691 435 880 Antisense
CGTGCTAGCTTCTCTTCATGGAGCA 413 245 897 Antisense
TGGCGATGATTGTGTTCACCCGACC 305 545 932 Antisense
ACCGTTGCTCAATTTCGCTAGATCA 409 87 954 Antisense
AAGCTTCACTCAATTTTCTTTCCAC 317 151 979 Antisense
TGTCGATTCGTGACGTGTCTTTCCT 289 557 1010 Antisense
TCTTTCCTCTCAAGCAGTCAATCGA 645 615 1027 Antisense
Sequence Source Affymetrix Proprietary Database