[Home] | [Total List]

[191492_at] G protein-coupled receptor

Description F42C5.2 /REP_DB=WormBase Gene ID /WP=CE04555 /TR=Q20325 /GB=AAA81482.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=G protein-coupled receptor
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 70      6grp_total > 05      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 518.9
(3)
P 		184.6
(-3)
P 		190.7
(-2.9)
P 		357.1
(0.1)
P 		334
B 525.7
(3)
P 		257.7
(-1.5)
P 		164.9
(-3)
P 		428.3
(1.4)
P 		361
C 566.1
(3)
P 		312.6
(-0.9)
P 		172.5
(-3)
P 		359.3
(-0.2)
P 		394
avr 536.9
(3) 		251.6
(-1.7) 		176
(-3) 		381.6
(0.4) 		361

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 555.2
(3)
P 		352.9
(-0.7)
P 		294.3
(-1.8)
P 		270.1
(-2.2)
P 		288.6
(-1.9)
P 		227.7
(-3)
P 		328
B 448
(3)
P 		361
(0.9)
P 		333.2
(0.2)
P 		268.4
(-1.4)
P 		323.7
(-0.1)
P 		203.7
(-3)
P 		244
C 369.3
(3)
P 		345.9
(2.2)
P 		280.6
(-0.2)
P 		332
(1.7)
P 		200.4
(-3)
P 		240.1
(-1.6)
P 		169
avr 457.5
(3) 		353.3
(0.3) 		302.7
(-1) 		290.2
(-1.3) 		270.9
(-1.8) 		223.8
(-3) 		234
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 188.9
(3)
P 		40.1
(-3)
P 		49.9
(-2.6)
P 		52.3
(-2.5)
P 		149
B 167.7
(3)
P 		63.6
(-1.8)
P 		38.2
(-3)
P 		91.3
(-0.5)
P 		130
C 187.4
(3)
P 		89.9
(-1.6)
P 		60.1
(-3)
P 		60.6
(-3)
P 		127
avr 181.3
(3) 		64.5
(-2.3) 		49.4
(-3) 		68.1
(-2.1) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 102.3
(1)
P 		125.5
(3)
P 		64.1
(-2.3)
P 		68.5
(-1.9)
P 		87.1
(-0.3)
P 		55.4
(-3)
P 		70
B 155.9
(3)
P 		120.2
(0.5)
P 		80.9
(-2.3)
P 		71.1
(-3)
P 		131.5
(1.3)
P 		76
(-2.7)
P 		85
C 136.9
(3)
P 		105.6
(0.4)
P 		71.4
(-2.5)
P 		66.8
(-2.8)
P 		64.8
(-3)
P 		80.4
(-1.7)
P 		72
avr 131.7
(3) 		117.1
(1.6) 		72.1
(-2.7) 		68.8
(-3) 		94.5
(-0.5) 		70.6
(-2.8) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191492_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10197
Sequence Type Exemplar sequence
Representative Public ID F42C5.2 NCBI
Target Description F42C5.2 /REP_DB=WormBase Gene ID /WP=CE04555 /TR=Q20325 /GB=AAA81482.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=G protein-coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068763(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068763 NCBI Caenorhabditis elegans F42C5.2 (F42C5.2) mRNA, complete cds. 11/11 None
SNAP00000034679 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7306514:7308334:1 11/11 None
GENEFINDER00000034692 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7305436:7308334:1 11/11 None
F42C5.2 ENSEMBL cdna:known chromosome:CEL140:IV:7304858:7308334:1 gene:F42C5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7304863-7308340(+) 100.0 100.0
Public Domain and Genome References
Gene Title G protein-coupled receptor
Ensembl F42C5.2
Entrez Gene 185662 Entrez gene
SwissProt Q20325 EMBL-EBI
WormBase CE04555 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81482 Hypothetical protein F42C5.2 [Caenorhabditis elegans] ref|NP_501164.1| F42C5.2 [Caenorhabditis elegans] 0.0
blast CAE61853 Hypothetical protein CBG05830 [Caenorhabditis briggsae] 0.0
blast AAB38097 Hypothetical protein T07F8.2 [Caenorhabditis elegans] ref|NP_495481.1| T07F8.2 [Caenorhabditis elegans] 2.0E-28
blast AAB38097 Hypothetical protein T07F8.2 [Caenorhabditis elegans] ref|NP_495481.1| T07F8.2 [Caenorhabditis elegans] 3.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.3E-14
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.3E-14
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.3E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501164.1 7 52-71,93-115,136-158,173-195,216-238,267-289,327-349
F42C5.2 7 52-71,93-115,136-158,173-195,216-238,267-289,327-349
SNAP00000034679 6 6-28,49-71,86-108,129-151,180-202,240-262
GENEFINDER00000034692 8 10-32,45-64,97-119,140-162,177-199,220-242,271-293,331-353
Sequence
Target Sequence 
>C. ELEGANS:191492_AT
gagttctcgtaccaacaatcatccattatttctaccttcaacatttctcagtaccatttg
acccagatgtcacctgggtttgtctaccactaatgtcaaatgaagtcttcaatctgttcg
cccaatacacatttgtcgttggtttcatcattccgttcgctataatgacagcctgctaca
tcatgctcgttcgtcatgttcgaacaaaatacaagatgcgaagagctcagacgacaacga
cgttggcgaaaccaggaaaagagccaagatatatgagtgaagtgaagaagagtatttgga
gaattgcagtgttccattttgtatgttgggctccgttttggggattcactatgcttccca
attatatttatcaaatcgatcaatttttgcatggggacaatgaggaagaaagtggtggag
aaagtattttcctcgtctattgtcgtcttgtctcaaattgtcttccatatataaatgctg
caggcaactgggttctatatgctcttctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTCTCGTACCAACAATCATCCA 529 397 689 Antisense
CATCCATTATTTCTACCTTCAACAT 194 211 708 Antisense
AGATGTCACCTGGGTTTGTCTACCA 650 67 753 Antisense
AATGAAGTCTTCAATCTGTTCGCCC 141 165 787 Antisense
GTTCGCCCAATACACATTTGTCGTT 175 443 804 Antisense
TGTCGTTGGTTTCATCATTCCGTTC 142 549 822 Antisense
ACATCATGCTCGTTCGTCATGTTCG 50 107 866 Antisense
GATTCACTATGCTTCCCAATTATAT 193 431 1031 Antisense
GAAAGTATTTTCCTCGTCTATTGTC 685 359 1108 Antisense
GTCGTCTTGTCTCAAATTGTCTTCC 510 473 1130 Antisense
AACTGGGTTCTATATGCTCTTCTGA 590 141 1174 Antisense
Sequence Source Affymetrix Proprietary Database