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[191491_at]

Description C33D9.8 /REP_DB=WormBase Gene ID /WP=CE03048 /TR=Q18376 /GB=CAA92286.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Human CLIP-170 like protein
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 62      4grp_high_8_8 > 26      6grp_highest_nonorm > 80      6grp_total > 24      4grp_total > 37      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 219.6
(3)
P 		149.9
(0.5)
P 		53.3
(-3)
P 		153.2
(0.6)
P 		166
B 219.6
(3)
P 		166.9
(1.1)
P 		57
(-3)
P 		193.3
(2)
P 		163
C 280.1
(3)
P 		150.1
(-0.9)
P 		80.9
(-3)
P 		185.2
(0.1)
P 		199
avr 239.8
(3) 		155.6
(0.1) 		63.7
(-3) 		177.2
(0.9) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 236
(1.6)
P 		193
(-0.2)
P 		267.7
(3)
P 		217.7
(0.9)
P 		133
(-2.7)
P 		127.1
(-3)
P 		141
B 333.8
(3)
P 		189.4
(-1)
P 		223
(-0)
P 		127.5
(-2.6)
P 		117.7
(-2.9)
P 		114.6
(-3)
P 		219
C 315.2
(3)
P 		255.3
(0.9)
P 		196.7
(-1.1)
P 		175.9
(-1.8)
P 		143.4
(-2.9)
P 		141.4
(-3)
P 		174
avr 295
(3) 		212.6
(0) 		229.1
(0.6) 		173.7
(-1.4) 		131.4
(-2.9) 		127.7
(-3) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 80
(3)
P 		32.5
(-1.3)
P 		13.9
(-3)
P 		22.4
(-2.2)
P 		66
B 70
(3)
P 		41.2
(-0)
P 		13.2
(-3)
P 		41.2
(-0)
P 		57
C 92.7
(3)
P 		43.1
(-1.6)
P 		28.2
(-3)
P 		31.2
(-2.7)
P 		65
avr 80.9
(3) 		38.9
(-1) 		18.4
(-3) 		31.6
(-1.7) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 43.5
(-1)
P 		68.6
(3)
P 		58.3
(1.4)
P 		55.2
(0.9)
P 		40.1
(-1.5)
P 		30.9
(-3)
P 		38
B 116.1
(3)
P 		63
(-0.9)
P 		54.2
(-1.5)
P 		33.8
(-3)
P 		47.8
(-2)
P 		42.7
(-2.4)
P 		82
C 116.8
(3)
P 		77.9
(0.1)
P 		50.1
(-1.9)
P 		35.4
(-3)
P 		46.4
(-2.2)
P 		47.3
(-2.1)
P 		81
avr 92.1
(3) 		69.8
(0.4) 		54.2
(-1.4) 		41.5
(-2.9) 		44.8
(-2.5) 		40.3
(-3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191491_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8692
Sequence Type Exemplar sequence
Representative Public ID C33D9.8 NCBI
Target Description C33D9.8 /REP_DB=WormBase Gene ID /WP=CE03048 /TR=Q18376 /GB=CAA92286.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Human CLIP-170 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069116(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069116 NCBI Caenorhabditis elegans C33D9.8 (C33D9.8) mRNA, complete cds. 11/11 None
SNAP00000033370 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8783359:8784836:-1 11/11 None
GENEFINDER00000033384 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8783359:8784836:-1 11/11 None
C33D9.8 ENSEMBL cdna:known chromosome:CEL140:IV:8783359:8786632:-1 gene:C33D9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8783364-8786638(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33D9.8
Entrez Gene 183160 Entrez gene
SwissProt Q18376 EMBL-EBI
WormBase CE03048 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92286 Hypothetical protein C33D9.8 [Caenorhabditis elegans] ref|NP_501517.1| C33D9.8 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:191491_AT
ttcggcgagtcggagcaaacacttattgagaaagtaaaaaataactcaaaagctgttgca
tccctaaatgcccagttgaaaaatgaactcagttacaccaaagcagtccataaaaggatt
ttgaaagataaggaacaatgcattgaagaacttgaaaaccgaataatgaaattggaaaca
ttgaaagaaactgaaacttttgaggagaaacgagaaatcaacaaatctgcaactaatgaa
ctaactgacatggaaatttctaaattttcgaagatcattgcaacgggaaaaaatgcaaga
aaatggaatgaaatgaaagttcaatttgaaagaatcgacaatattgtaaatggattggaa
gcgcgttatcaatcgatgtctgaaaaagtgaatgaagaaattagcgatgaaactatcgct
cgactttcaagcttaattgaagaaaaggaaacacaagctcataatcttagcatgacatta
caagcgttgaaagacattggaattgaaccagaagaaaatattcaagatgaagggaagaat
gataatgtggtagcagagaaagtgcttagctcatcggattccactgattcgcaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGGCGAGTCGGAGCAAACACTTA 344 691 1198 Antisense
TAACTCAAAAGCTGTTGCATCCCTA 432 639 1239 Antisense
GTTGCATCCCTAAATGCCCAGTTGA 93 439 1252 Antisense
CTCAGTTACACCAAAGCAGTCCATA 245 227 1285 Antisense
ATTTTCGAAGATCATTGCAACGGGA 120 13 1461 Antisense
GGAAGCGCGTTATCAATCGATGTCT 276 531 1554 Antisense
CGATGAAACTATCGCTCGACTTTCA 201 249 1602 Antisense
TCGCTCGACTTTCAAGCTTAATTGA 266 591 1613 Antisense
AACACAAGCTCATAATCTTAGCATG 370 135 1647 Antisense
AAAGTGCTTAGCTCATCGGATTCCA 703 119 1756 Antisense
CATCGGATTCCACTGATTCGCAAGG 708 209 1769 Antisense
Sequence Source Affymetrix Proprietary Database