[Home] | [Total List]

[191490_at] lysosomal carboxypeptidase

Description F19C7.4 /REP_DB=WormBase Gene ID /WP=CE04418 /TR=Q19590 /GB=AAA83509.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=lysosomal carboxypeptidase
Cluster 6grp_total > 22      4grp_total > 60      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 114.5
(1.1)
P 		114.3
(1)
M 		152.4
(3)
P 		35.3
(-3)
A 		117
B 114.9
(3)
P 		105.7
(2.4)
P 		91.9
(1.6)
M 		15.7
(-3)
A 		99
C 123.7
(3)
P 		111.9
(2.4)
P 		121.1
(2.9)
P 		5.7
(-3)
A 		118
avr 117.7
(2.8) 		110.6
(2.3) 		121.8
(3) 		18.9
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 119.3
(3)
P 		100.7
(2)
P 		71.1
(0.5)
A 		56.5
(-0.3)
A 		5.7
(-3)
A 		12.8
(-2.6)
A 		114
B 83.9
(1.2)
P 		116
(3)
P 		88.9
(1.5)
M 		36.7
(-1.5)
A 		27.4
(-2.1)
A 		10.8
(-3)
A 		105
C 79.5
(1.3)
P 		110
(3)
P 		102.2
(2.6)
P 		56.5
(0.1)
P 		30
(-1.4)
A 		1.1
(-3)
A 		109
avr 94.2
(2.1) 		108.9
(3) 		87.4
(1.7) 		49.9
(-0.5) 		21
(-2.2) 		8.2
(-3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 41.7
(3)
P 		24.8
(0.2)
M 		39.8
(2.7)
P 		5.2
(-3)
A 		37
B 36.7
(3)
P 		26.1
(1.1)
P 		21.3
(0.2)
M 		3.3
(-3)
A 		33
C 41
(2.8)
P 		32.2
(1.5)
P 		42.2
(3)
P 		1
(-3)
A 		41
avr 39.8
(3) 		27.7
(1) 		34.4
(2.1) 		3.2
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 22
(0.6)
P 		35.8
(3)
P 		15.5
(-0.6)
A 		14.3
(-0.8)
A 		1.7
(-3)
A 		3.1
(-2.8)
A 		34
B 29.2
(1.4)
P 		38.6
(3)
P 		21.6
(0.1)
M 		9.7
(-2)
A 		11.1
(-1.8)
A 		4
(-3)
A 		35
C 29.5
(2.3)
P 		33.6
(3)
P 		26
(1.6)
P 		11.4
(-1)
P 		9.7
(-1.3)
A 		0.4
(-3)
A 		33
avr 26.9
(1.4) 		36
(3) 		21
(0.3) 		11.8
(-1.3) 		7.5
(-2.1) 		2.5
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191490_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11157
Sequence Type Exemplar sequence
Representative Public ID F19C7.4 NCBI
Target Description F19C7.4 /REP_DB=WormBase Gene ID /WP=CE04418 /TR=Q19590 /GB=AAA83509.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=lysosomal carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068195(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068195 NCBI Caenorhabditis elegans F19C7.4 (F19C7.4) mRNA, complete cds. 10/11 None
GENEFINDER00000030510 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4603098:4605605:1 9/11 None
F19C7.4 ENSEMBL cdna:known chromosome:CEL140:IV:4603098:4605648:1 gene:F19C7.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030499 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4603103-4605685(+) 100.0 100.0
Public Domain and Genome References
Gene Title lysosomal carboxypeptidase
Ensembl F19C7.4
Entrez Gene 184680 Entrez gene
SwissProt Q19590 EMBL-EBI
WormBase CE34540 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8236 serine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83509 Hypothetical protein F19C7.4 [Caenorhabditis elegans] ref|NP_500596.2| F19C7.4 [Caenorhabditis elegans] 0.0
blast AAA83508 Hypothetical protein F19C7.2 [Caenorhabditis elegans] ref|NP_500595.1| F19C7.2 [Caenorhabditis elegans] 0.0
blast CAE58551 Hypothetical protein CBG01710 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191490_AT
aagcctattcggacactacaatgcccaatgagaacgtcattggcactcgcagttggatct
ggcagacttgcacggagctcggatattatcagactactgacggaggaaatggtggaatct
ttggatctacagttccacttgatttcttcgccgatcaatgcattgatctctttgggccgg
aatacaccctggataatactttcaaactcgtagatcaagttcgtactaaatacggaggag
ctggcacatatcgtggaaccaatgtcgtttttccaaacggatccttcgatccttggaatg
gtcttggctacaaatggaataacacgaataataatgttgatgcttggttgatcgaaggaa
catctcattgtgctgatatgtatccagcaagcgattcggataaacaatcattgaaagatg
cgagaatccggattcatggtcatttatccagaatgcctcttattcaaatgggtcttgcca
cgaaaaaattgttccactacaaacttctcaatcttcaccgccatctccattgtaattttc
agcatcctattctaactttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCTATTCGGACACTACAATGCC 82 149 1088 Antisense
TGAGAACGTCATTGGCACTCGCAGT 659 567 1116 Antisense
TGGCACTCGCAGTTGGATCTGGCAG 144 547 1128 Antisense
GATCTGGCAGACTTGCACGGAGCTC 52 419 1143 Antisense
CATTGATCTCTTTGGGCCGGAATAC 90 217 1248 Antisense
GGAGCTGGCACATATCGTGGAACCA 673 519 1324 Antisense
GATCCTTGGAATGGTCTTGGCTACA 74 417 1375 Antisense
AATGCCTCTTATTCAAATGGGTCTT 418 167 1539 Antisense
CACTACAAACTTCTCAATCTTCACC 48 197 1582 Antisense
CCGCCATCTCCATTGTAATTTTCAG 228 263 1605 Antisense
TTCAGCATCCTATTCTAACTTTCAA 393 687 1625 Antisense
Sequence Source Affymetrix Proprietary Database