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[191485_at] serine protease inhibitor

Description C54D10.10 /REP_DB=WormBase Gene ID /WP=CE05506 /TR=Q18836 /GB=CAA99845.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine protease inhibitor
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 45      6grp_total > 83      4grp_total > 10      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2790
1 2 3 4 range
A 512.8
(-3)
P 		870.4
(-2.2)
P 		697.9
(-2.6)
P 		3156.4
(3)
P 		2644
B 536.6
(-3)
P 		794.1
(-2.3)
P 		789.4
(-2.3)
P 		2853.4
(3)
P 		2317
C 578.1
(-3)
P 		836.3
(-2.4)
P 		651.6
(-2.8)
P 		3302.4
(3)
P 		2724
avr 542.5
(-3) 		833.6
(-2.3) 		713
(-2.6) 		3104.1
(3) 		2562

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3931
1 2 3 4 5 6 range
A 420.3
(-3)
P 		1409.6
(-1.1)
P 		2049.5
(0.2)
P 		2389.6
(0.8)
P 		3494.6
(3)
P 		1755.4
(-0.4)
P 		3074
B 390.5
(-3)
P 		1965
(-0.6)
P 		1869.3
(-0.7)
P 		2195.5
(-0.2)
P 		4291.5
(3)
P 		2089.8
(-0.4)
P 		3901
C 360.4
(-3)
P 		1858.2
(0.6)
P 		1303.4
(-0.7)
P 		2580.5
(2.4)
P 		2840.7
(3)
P 		2179.3
(1.4)
P 		2480
avr 390.4
(-3) 		1744.3
(-0.4) 		1740.7
(-0.4) 		2388.5
(0.8) 		3542.3
(3) 		2008.2
(0.1) 		3152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 437
1 2 3 4 range
A 186.7
(-2.9)
P 		188.9
(-2.9)
P 		182.4
(-3)
P 		462
(3)
P 		280
B 171.1
(-3)
P 		196.1
(-2.7)
P 		182.9
(-2.8)
P 		608.1
(3)
P 		437
C 191.4
(-3)
P 		240.4
(-2.2)
P 		227.1
(-2.4)
P 		556.8
(3)
P 		365
avr 183.1
(-3) 		208.5
(-2.6) 		197.5
(-2.8) 		542.3
(3) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1666
1 2 3 4 5 6 range
A 77.5
(-3)
P 		501.3
(-0.4)
P 		446.3
(-0.7)
P 		606.1
(0.2)
P 		1054.5
(3)
P 		427.4
(-0.9)
P 		977
B 135.9
(-3)
P 		654.1
(-1.1)
P 		453.9
(-1.8)
P 		581.5
(-1.3)
P 		1743.6
(3)
P 		779.3
(-0.6)
P 		1608
C 133.6
(-3)
P 		567
(0.3)
P 		331.7
(-1.5)
P 		518.9
(-0.1)
P 		919.2
(3)
P 		729.5
(1.6)
P 		786
avr 115.7
(-3) 		574.1
(-0.6) 		410.6
(-1.4) 		568.8
(-0.6) 		1239.1
(3) 		645.4
(-0.2) 		1123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191485_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13882
Sequence Type Exemplar sequence
Representative Public ID C54D10.10 NCBI
Target Description C54D10.10 /REP_DB=WormBase Gene ID /WP=CE05506 /TR=Q18836 /GB=CAA99845.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine protease inhibitor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073722(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073722 NCBI Caenorhabditis elegans C54D10.10 (C54D10.10) mRNA, complete cds. 11/11 None
C54D10.10 ENSEMBL cdna:known chromosome:CEL140:V:12451291:12452708:-1 gene:C54D10.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038027 8/11 Cross Hyb Matching Probes None
GENEFINDER00000044359 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12451290-12452708(-) 90.39 100.0
Public Domain and Genome References
Gene Title serine protease inhibitor
Ensembl C54D10.10
Entrez Gene 183787 Entrez gene
SwissProt Q18836 EMBL-EBI
WormBase CE05506 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99845 Hypothetical protein C54D10.10 [Caenorhabditis elegans] emb|CAA99808.1| Hypothetical protein C54D10.10 [Caenorhabditis elegans] ref|NP_506123.1| C54D10.10 [Caenorhabditis elegans] 1.0E-117
blast CAE75492 Hypothetical protein CBG23496 [Caenorhabditis briggsae] 9.0E-88
blast AAC48097 Hypothetical protein T21D12.12 [Caenorhabditis elegans] ref|NP_499892.1| T21D12.12 [Caenorhabditis elegans] 3.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.6E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.6E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506123.1 1 15-32
C54D10.10 1 15-32
Sequence
Target Sequence 
>C. ELEGANS:191485_AT
tgttgtatatcgtcagtctctgctataaactgccgccaggagaaggataccggtgtcaac
tgtgataataaaccaattacattgaaattttattttgatatgagaacaaacgtgtgccaa
cctcttttctatcgaggatgtggaggaaacgagaatcgatttgagagcagagatgcttgt
agtgatgcttgtgttccacataagcccggtaaaacaaagaaaccagagaagaaggaagat
gatggagaagcagaaactgacgatgatgaggaagatagtgaagaagaagaagttcaagtt
aataaggatatgagcttaattgtgaatgcctgtaaactcccaaccgacgcaaaaatagtc
acaaaagctcaaaaatgtgacaatggctgtccaacaggctatcgttgtacaaagaagaac
ttctgttgtccttatcctgatcatgtgtgttcacttccagtttcttctggatcagaacgc
cttgcattcaaacattatggtagatatgcttatcaaccgggactcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTGTATATCGTCAGTCTCTGCTA 315 563 79 Antisense
TCTCTGCTATAAACTGCCGCCAGGA 385 611 95 Antisense
GAAGGATACCGGTGTCAACTGTGAT 519 333 120 Antisense
GTGCCAACCTCTTTTCTATCGAGGA 61 479 192 Antisense
TTGTGTTCCACATAAGCCCGGTAAA 28 617 267 Antisense
TTGTGAATGCCTGTAAACTCCCAAC 547 705 398 Antisense
AATGGCTGTCCAACAGGCTATCGTT 101 163 460 Antisense
GAAGAACTTCTGTTGTCCTTATCCT 423 339 492 Antisense
CATGTGTGTTCACTTCCAGTTTCTT 617 209 520 Antisense
GGATCAGAACGCCTTGCATTCAAAC 353 511 547 Antisense
GATATGCTTATCAACCGGGACTCAA 609 425 581 Antisense
Sequence Source Affymetrix Proprietary Database