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[191484_at]

Description R10D12.3 /REP_DB=WormBase Gene ID /WP=CE12676 /TR=Q9XVK2 /GB=CAB03243.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 15      4grp_total > 01      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 10.6
(-2.4)
A 		6.4
(-2.7)
A 		2.9
(-3)
A 		86.8
(3)
A 		84
B 4.8
(-2.6)
A 		2.7
(-3)
A 		15.6
(-0.5)
A 		33.9
(3)
A 		31
C 9.3
(-2.2)
A 		1.9
(-3)
A 		6.5
(-2.5)
A 		55.1
(3)
P 		53
avr 8.2
(-2.5) 		3.7
(-3) 		8.3
(-2.5) 		58.6
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 8.6
(-0.7)
A 		4.3
(-2.1)
A 		10.5
(-0)
A 		1.5
(-3)
A 		3.8
(-2.2)
A 		19.7
(3)
A 		18
B 30.4
(3)
A 		16.2
(-0)
A 		4.2
(-2.6)
A 		7.9
(-1.8)
A 		22.4
(1.3)
A 		2.2
(-3)
A 		28
C 19.2
(-0.5)
A 		45.1
(3)
A 		20.3
(-0.4)
A 		26.1
(0.4)
A 		1.1
(-3)
A 		2.5
(-2.8)
A 		44
avr 19.4
(1.9) 		21.9
(3) 		11.7
(-1.4) 		11.8
(-1.4) 		9.1
(-2.6) 		8.1
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.8
(-1.5)
A 		1.4
(-2.7)
A 		0.8
(-3)
A 		12.7
(3)
A 		12
B 1.5
(-2.3)
A 		0.7
(-3)
A 		3.6
(-0.3)
A 		7.2
(3)
A 		7
C 3.1
(-1.2)
A 		0.5
(-3)
A 		2.3
(-1.8)
A 		9.3
(3)
P 		9
avr 2.8
(-1.7) 		0.9
(-3) 		2.2
(-2.1) 		9.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.6
(-1.4)
A 		1.5
(-1.5)
A 		2.3
(-0.4)
A 		0.4
(-3)
A 		1.1
(-2)
A 		4.8
(3)
A 		4
B 10.6
(3)
A 		5.4
(-0.2)
A 		1
(-2.9)
A 		2.1
(-2.2)
A 		9.1
(2.1)
A 		0.8
(-3)
A 		10
C 7.1
(0)
A 		13.8
(3)
A 		5.2
(-0.8)
A 		5.3
(-0.8)
A 		0.3
(-3)
A 		0.8
(-2.8)
A 		14
avr 6.4
(2.4) 		6.9
(3) 		2.8
(-2.1) 		2.6
(-2.4) 		3.5
(-1.3) 		2.1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191484_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14657
Sequence Type Exemplar sequence
Representative Public ID R10D12.3 NCBI
Target Description R10D12.3 /REP_DB=WormBase Gene ID /WP=CE12676 /TR=Q9XVK2 /GB=CAB03243.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000021072 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13942785:13947178:-1 11/11 None
R10D12.3 ENSEMBL cdna:pseudogene chromosome:CEL140:V:13946051:13947178:-1 gene:R10D12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13946050-13947178(-) 96.4 100.0
Public Domain and Genome References
Ensembl R10D12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03244 Hypothetical protein R10D12.2 [Caenorhabditis elegans] ref|NP_506457.1| Dauer Pheromone Responsive family member (dpr-1) [Caenorhabditis elegans] 1.0E-165
blast T24113 hypothetical protein R10D12.3 - Caenorhabditis elegans 1.0E-134
blast CAE66190 Hypothetical protein CBG11428 [Caenorhabditis briggsae] 8.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.1E-5
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 9.4E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021072 6 10-32,53-73,83-105,125-147,177-199,220-242
Sequence
Target Sequence 
>C. ELEGANS:191484_AT
gacatttagccaagtcaattaccacttgaatcaaataattggcctggcaatatgtttatg
ggcatttgttctaagtactgataattttgtggctatttgtttatcgtgcaatcgatttta
ttttttatattttccatttggaattaaaaagctccaaaactttactgtaaccaactgggc
tatattaatctcaaccatttttattggttatctaacagttttatcagttcctgaaggttg
cggatgggtctatgatccaaatgtattcatttggagagtggaaaagtatccgtgtgcgga
gaatcttgagcaagtgtatccttatattattttcacttcgacaattattacaattagttt
taattttgcaattgtgtgtatgattcaagatatcatgcaattgttagacacaattaatgc
cttctatctttcaaaattcgatgattctgcctggtatcgatttatttttgcaacactttc
ttttgtaacagtgacatcactggatggatttgttatgctttgttatcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATTTAGCCAAGTCAATTACCAC 231 371 225 Antisense
ATGGGCATTTGTTCTAAGTACTGAT 118 51 282 Antisense
GTGGCTATTTGTTTATCGTGCAATC 49 493 313 Antisense
GGGCTATATTAATCTCAACCATTTT 30 493 401 Antisense
GAAGGTTGCGGATGGGTCTATGATC 647 333 457 Antisense
ATCCGTGTGCGGAGAATCTTGAGCA 404 39 512 Antisense
GTATCCTTATATTATTTTCACTTCG 167 455 540 Antisense
GACACAATTAATGCCTTCTATCTTT 226 367 631 Antisense
GATGATTCTGCCTGGTATCGATTTA 153 409 664 Antisense
GATTTATTTTTGCAACACTTTCTTT 368 427 683 Antisense
GGATTTGTTATGCTTTGTTATCACC 94 509 730 Antisense
Sequence Source Affymetrix Proprietary Database