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[191482_at] UDP-glucoronosyltransferase

Description F01D4.1 /REP_DB=WormBase Gene ID /WP=CE09153 /TR=O17756 /GB=CAB02883.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucoronosyltransferase
Cluster 6grp_total > 84      4grp_total > 49      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 12.6
(-3)
A 		65.4
(3)
P 		35.6
(-0.4)
A 		15.2
(-2.7)
A 		53
B 3.7
(-3)
A 		38
(1.3)
A 		51.5
(3)
P 		4.1
(-2.9)
A 		48
C 13.4
(-3)
A 		53.8
(1.7)
P 		65.4
(3)
P 		32.3
(-0.8)
A 		52
avr 9.9
(-3) 		52.4
(3) 		50.8
(2.8) 		17.2
(-2) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 34.5
(-1.3)
A 		20.5
(-3)
A 		39.2
(-0.8)
P 		71.1
(3)
A 		47.9
(0.2)
P 		69.3
(2.8)
P 		51
B 24.9
(-3)
A 		32.3
(-1.5)
A 		47.2
(1.5)
P 		39.3
(-0.1)
A 		51.3
(2.4)
P 		54.5
(3)
A 		30
C 28.3
(-2.1)
A 		27.7
(-2.2)
A 		18.2
(-3)
A 		86.2
(3)
A 		79.8
(2.4)
P 		38.2
(-1.2)
A 		68
avr 29.2
(-2.6) 		26.8
(-3) 		34.9
(-1.7) 		65.5
(3) 		59.7
(2.1) 		54
(1.2) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 4.6
(-1.8)
A 		14.2
(3)
P 		9.3
(0.6)
A 		2.2
(-3)
A 		12
B 1.2
(-2.8)
A 		9.4
(1.6)
A 		11.9
(3)
P 		0.9
(-3)
A 		11
C 4.4
(-3)
A 		15.5
(0.6)
P 		22.8
(3)
P 		5.4
(-2.7)
A 		18
avr 3.4
(-2.7) 		13
(2.1) 		14.7
(3) 		2.8
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 6.4
(-3)
A 		7.3
(-2.5)
A 		8.5
(-1.9)
P 		18
(3)
A 		14.5
(1.2)
P 		16.9
(2.4)
P 		12
B 8.7
(-3)
A 		10.7
(-2)
A 		11.5
(-1.6)
P 		10.4
(-2.2)
A 		20.8
(3)
P 		20.3
(2.8)
A 		12
C 10.5
(-1.3)
A 		8.5
(-1.9)
A 		4.6
(-3)
A 		17.3
(0.6)
A 		25.8
(3)
P 		12.8
(-0.7)
A 		21
avr 8.5
(-2.9) 		8.8
(-2.7) 		8.2
(-3) 		15.2
(0.4) 		20.4
(3) 		16.7
(1.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191482_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10093
Sequence Type Exemplar sequence
Representative Public ID F01D4.1 NCBI
Target Description F01D4.1 /REP_DB=WormBase Gene ID /WP=CE09153 /TR=O17756 /GB=CAB02883.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucoronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069531(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069531 NCBI Caenorhabditis elegans F01D4.1 (UDP-glucoronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000032302 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10464760:10467212:1 11/11 None
GENEFINDER00000032315 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10464631:10467212:1 11/11 None
F01D4.1 ENSEMBL cdna:known chromosome:CEL140:IV:10464631:10467212:1 gene:F01D4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10464636-10467218(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucoronosyltransferase
Gene Symbol ugt-43
Ensembl F01D4.1
Entrez Gene 184052 Entrez gene
SwissProt O17756 EMBL-EBI
WormBase CE38497 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02883 Hypothetical protein F01D4.1 [Caenorhabditis elegans] ref|NP_501932.2| F01D4.1 [Caenorhabditis elegans] 0.0
blast CAE63834 Hypothetical protein CBG08388 [Caenorhabditis briggsae] 0.0
blast CAB02884 Hypothetical protein F01D4.2 [Caenorhabditis elegans] ref|NP_501933.1| F01D4.2 [Caenorhabditis elegans] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.6E-23
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.6E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501932.2 1 509-531
F01D4.1 1 509-531
SNAP00000032302 1 504-526
GENEFINDER00000032315 1 509-531
Sequence
Target Sequence 
>C. ELEGANS:191482_AT
attgctctcggaatgatgcctgatatcacttttatatggaaatacgaaaactcttctatc
gacattgtgaaagagtttgacccaacaatcaaaaacatagtacaagttgattggatgcca
cagcaggcacttttagctgatcctcgattagatctttttgttactcatgggggtatggca
agtacaaatgaaattgcattcagtggaaaacctgcagttatggtaccagtttttggagat
caaacaagaaattcgagaatgttagagagacatggaggcgttttgatgttacggaaagag
aatctagaatatccggaaattgttatagaaacaattttatcagttttgaatgatccatct
tacgctgaaagagcacaacaattggcaacgcttttgagaaatcaccccgaatcaccaaaa
caagttttcctgaaatatttcaactttgtggcgagattcggaaaaccaactggaattgat
tcaaactccataaatgtagattttatcgcatattattacttggatcttattgccttctta
cttattgtggcctattttgcaaagtttcttgtgtcccatgtatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCTCTCGGAATGATGCCTGATA 678 5 1012 Antisense
GAAAACTCTTCTATCGACATTGTGA 173 355 1057 Antisense
GGATGCCACAGCAGGCACTTTTAGC 179 513 1124 Antisense
ACTTTTAGCTGATCCTCGATTAGAT 103 101 1140 Antisense
TTGAATGATCCATCTTACGCTGAAA 84 705 1357 Antisense
GCAACGCTTTTGAGAAATCACCCCG 104 321 1396 Antisense
TCACCCCGAATCACCAAAACAAGTT 614 623 1413 Antisense
TACTTGGATCTTATTGCCTTCTTAC 183 645 1528 Antisense
CCTTCTTACTTATTGTGGCCTATTT 503 265 1544 Antisense
GTGGCCTATTTTGCAAAGTTTCTTG 371 491 1558 Antisense
AAGTTTCTTGTGTCCCATGTATATT 53 157 1573 Antisense
Sequence Source Affymetrix Proprietary Database