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[191481_at] 7TM chemoreceptor, srh family

Description ZC132.7 /REP_DB=WormBase Gene ID /WP=CE15048 /GEN=srh-192 /TR=O17520 /GB=AAB63929.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 01      4grp_total > 02      6grp_cgc > 63      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 9.9
(-2.9)
A 		8.1
(-3)
A 		8
(-3)
A 		85.4
(3)
A 		77
B 11.1
(-2.5)
A 		38.4
(3)
A 		33.3
(2)
A 		8.8
(-3)
A 		30
C 43.5
(-0.9)
A 		18.6
(-2.5)
A 		11.7
(-3)
A 		102.7
(3)
A 		91
avr 21.5
(-2.5) 		21.7
(-2.5) 		17.7
(-3) 		65.6
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 7
(-2.1)
A 		4.1
(-2.9)
A 		25
(3)
A 		7.5
(-2)
A 		3.9
(-3)
A 		4.6
(-2.8)
A 		21
B 19.8
(1.3)
A 		9.4
(-2.3)
A 		7.3
(-3)
A 		15.6
(-0.2)
A 		24.9
(3)
A 		11.6
(-1.5)
A 		18
C 2.6
(-3)
A 		63
(3)
A 		2.6
(-3)
A 		21.6
(-1.1)
A 		16.3
(-1.6)
A 		4.3
(-2.8)
A 		60
avr 9.8
(-2) 		25.5
(3) 		11.6
(-1.5) 		14.9
(-0.4) 		15
(-0.4) 		6.8
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.6
(-2)
A 		1.8
(-3)
A 		2.1
(-2.8)
A 		12.5
(3)
A 		11
B 3.5
(-1.7)
A 		9.5
(3)
A 		7.7
(1.6)
A 		1.9
(-3)
A 		8
C 14.4
(1.7)
A 		5.4
(-2.4)
A 		4.1
(-3)
A 		17.3
(3)
A 		13
avr 7.2
(-0.4) 		5.6
(-2) 		4.6
(-3) 		10.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.3
(-2.7)
A 		1.5
(-2.4)
A 		5.4
(3)
A 		1.9
(-1.9)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		4
B 6.9
(0.7)
A 		3.1
(-2.1)
A 		1.8
(-3)
A 		4.1
(-1.3)
A 		10.1
(3)
A 		4.3
(-1.2)
A 		8
C 1
(-2.9)
A 		19.2
(3)
A 		0.6
(-3)
A 		4.4
(-1.8)
A 		5.3
(-1.5)
A 		1.4
(-2.7)
A 		19
avr 3.1
(-2.1) 		7.9
(3) 		2.6
(-2.7) 		3.5
(-1.7) 		5.5
(0.4) 		2.3
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191481_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19478
Sequence Type Exemplar sequence
Representative Public ID ZC132.7 NCBI
Target Description ZC132.7 /REP_DB=WormBase Gene ID /WP=CE15048 /GEN=srh-192 /TR=O17520 /GB=AAB63929.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071789(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071789 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-192) (srh-192) mRNA, complete cds. 11/11 None
ZC132.7 ENSEMBL cdna:known chromosome:CEL140:V:4311807:4314971:-1 gene:ZC132.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4311806-4314995(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-192
Ensembl ZC132.7
Entrez Gene 191083 Entrez gene
SwissProt O17520 EMBL-EBI
WormBase CE38127 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB63929 Serpentine receptor, class h protein 192 [Caenorhabditis elegans] ref|NP_504190.2| Serpentine Receptor, class H family member (srh-192) [Caenorhabditis elegans] 0.0
blast AAG24117 Serpentine receptor, class h protein 193 [Caenorhabditis elegans] ref|NP_504183.2| Serpentine Receptor, class H family member (srh-193) [Caenorhabditis elegans] 1.0E-115
blast AAW88397 Serpentine receptor, class h protein 194, isoform b [Caenorhabditis elegans] ref|NP_001023946.1| Serpentine Receptor, class H family member (srh-194) [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504190.2 7 20-42,55-77,97-119,140-162,202-224,245-267,282-304
ZC132.7 7 20-42,55-77,97-119,140-162,202-224,245-267,282-304
Sequence
Target Sequence 
>C. ELEGANS:191481_AT
gaggcgtatctggttagccactcattacgtcattgttccaactttcctgactccaattgt
ttttctaactcccgatcagaaaattgcagtacccctcatgttccagaaacttccatgtct
tcccagttatatttatgaagctccaattttggtgttgagtgaaagtcttacttatcatgc
tactatctcagttgtttatatatttctagttttgattgaatcttttatatttgtgggata
ccttattttcaacatcgtcaagcaaatgaaagagcataaaatgtctccaaaaacgtttga
acttcagaaaaagtttattattactctactcattcaagtgtcaattccaatgatttgttt
catttttacattgatttatattggtttcgcatatttgattaactattacaatcaaggatt
gaataatgcaactctggcaatattttcctgtcatggtagtgtatcgacaatagcacttat
tgcacttcatgcaccataccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCGTATCTGGTTAGCCACTCAT 610 405 450 Antisense
CCACTCATTACGTCATTGTTCCAAC 109 275 467 Antisense
CCAACTTTCCTGACTCCAATTGTTT 285 277 487 Antisense
CAATTGTTTTTCTAACTCCCGATCA 462 177 503 Antisense
GAAAATTGCAGTACCCCTCATGTTC 475 353 528 Antisense
TTCCATGTCTTCCCAGTTATATTTA 286 701 560 Antisense
GTCTTACTTATCATGCTACTATCTC 407 469 614 Antisense
GGGATACCTTATTTTCAACATCGTC 556 495 684 Antisense
GTTTATTATTACTCTACTCATTCAA 135 449 762 Antisense
CTCTGGCAATATTTTCCTGTCATGG 59 233 881 Antisense
TATTGCACTTCATGCACCATACCGG 567 665 927 Antisense
Sequence Source Affymetrix Proprietary Database