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[191480_at] G-protein coupled receptor

Description K10C8.2 /REP_DB=WormBase Gene ID /WP=CE06168 /TR=Q21413 /GB=CAA98955.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_high1_10_10 > 27      4grp_high_8_8 > 03      6grp_total > 27      4grp_total > 13      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 186.9
(0.8)
P 		60.5
(-2.1)
P 		21.2
(-3)
A 		285.3
(3)
P 		264
B 140.8
(-0.7)
P 		92.5
(-1.8)
P 		35.2
(-3)
A 		316.1
(3)
P 		281
C 194.4
(1.5)
P 		81.8
(-2.2)
P 		58.5
(-3)
P 		239.3
(3)
P 		181
avr 174
(0.4) 		78.3
(-2) 		38.3
(-3) 		280.2
(3) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 138.7
(3)
P 		137.9
(2.9)
P 		122.8
(1.5)
P 		76.5
(-3)
P 		83.6
(-2.3)
P 		102.1
(-0.5)
P 		62
B 163.1
(3)
P 		141.1
(1.3)
P 		98
(-2.1)
P 		105.7
(-1.5)
P 		85.8
(-3)
P 		125.4
(0.1)
P 		77
C 152.3
(3)
P 		101.2
(-0.3)
P 		92.5
(-0.8)
P 		58.3
(-3)
A 		136.9
(2)
P 		100.3
(-0.3)
P 		94
avr 151.4
(3) 		126.7
(0.9) 		104.4
(-1) 		80.2
(-3) 		102.1
(-1.2) 		109.3
(-0.5) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 68.1
(3)
P 		13.1
(-2.3)
P 		5.5
(-3)
A 		41.8
(0.5)
P 		63
B 44.9
(0.7)
P 		22.9
(-1.5)
P 		8.1
(-3)
A 		67.4
(3)
P 		59
C 64.3
(3)
P 		23.5
(-2.6)
P 		20.4
(-3)
P 		40.3
(-0.3)
P 		44
avr 59.1
(3) 		19.8
(-1.9) 		11.3
(-3) 		49.8
(1.8) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 25.6
(-1.7)
P 		49.1
(3)
P 		26.7
(-1.5)
P 		19.4
(-3)
P 		25.2
(-1.8)
P 		24.9
(-1.9)
P 		30
B 56.7
(3)
P 		47
(1.2)
P 		23.8
(-3)
P 		28
(-2.2)
P 		34.9
(-1)
P 		46.8
(1.2)
P 		33
C 56.5
(3)
P 		30.9
(-0.4)
P 		23.5
(-1.4)
P 		11.7
(-3)
A 		44.3
(1.4)
P 		33.6
(-0.1)
P 		45
avr 46.3
(3) 		42.3
(2.1) 		24.7
(-1.9) 		19.7
(-3) 		34.8
(0.4) 		35.1
(0.5) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14717
Sequence Type Exemplar sequence
Representative Public ID K10C8.2 NCBI
Target Description K10C8.2 /REP_DB=WormBase Gene ID /WP=CE06168 /TR=Q21413 /GB=CAA98955.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073767(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073767 NCBI Caenorhabditis elegans K10C8.2 (K10C8.2) mRNA, complete cds. 11/11 None
GENEFINDER00000025101 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12693103:12694954:1 10/11 None
K10C8.2 ENSEMBL cdna:known chromosome:CEL140:V:12693103:12695025:1 gene:K10C8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025091 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12693102-12695025(+) 98.28 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl K10C8.2
Entrez Gene 187257 Entrez gene
SwissProt Q21413 EMBL-EBI
WormBase CE06168 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98955 Hypothetical protein K10C8.2 [Caenorhabditis elegans] ref|NP_506168.1| K10C8.2 [Caenorhabditis elegans] 0.0
blast CAE63966 Hypothetical protein CBG08555 [Caenorhabditis briggsae] 0.0
blast CAE63966 Hypothetical protein CBG08555 [Caenorhabditis briggsae] 1.0E-173
blast CAE75139 Hypothetical protein CBG23068 [Caenorhabditis briggsae] 1.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506168.1 7 20-42,55-77,97-119,140-162,201-223,296-318,333-355
K10C8.2 7 20-42,55-77,97-119,140-162,201-223,296-318,333-355
GENEFINDER00000025101 7 20-42,55-77,97-119,140-162,201-223,296-318,333-355
Sequence
Target Sequence 
>C. ELEGANS:191480_AT
gtgattctacagtacccactgacacaatcgttacaaaaattgatggatattcggcagttg
ttccagttgaaaacggagaaaaaggaaatggaattctcatgggtggagctaacaatggaa
gtgtgaaaaatgacaaaaaagaaaatggagtgactgtaatgcttgtggcaatcacaaccg
aatttttactcttcaacctgattgcatttgccacaaatattattgaattatcaagtatca
gatttttcgctgatctagaaactctattggtggagctatcaacatttctggtgaacgtca
acggggcgtcgacaattataatttatttaatttttggaagcaagtatcgcaatgtgttca
ttcgactttttcgaaaaaatttggggcacaatttttgtgcaagcgagcgttattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATTCTACAGTACCCACTGACAC 434 485 743 Antisense
GTACCCACTGACACAATCGTTACAA 287 459 754 Antisense
GATATTCGGCAGTTGTTCCAGTTGA 211 427 788 Antisense
GTGACTGTAATGCTTGTGGCAATCA 416 483 892 Antisense
GTGGCAATCACAACCGAATTTTTAC 124 491 907 Antisense
GAATTTTTACTCTTCAACCTGATTG 305 323 922 Antisense
CTTCAACCTGATTGCATTTGCCACA 83 223 933 Antisense
GGTGGAGCTATCAACATTTCTGGTG 421 499 1011 Antisense
TGGTGAACGTCAACGGGGCGTCGAC 381 551 1031 Antisense
CAATGTGTTCATTCGACTTTTTCGA 689 181 1092 Antisense
ATTTTTGTGCAAGCGAGCGTTATTC 505 15 1133 Antisense
Sequence Source Affymetrix Proprietary Database