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[191479_at] 7TM chemoreceptor, str family

Description F58G4.7 /REP_DB=WormBase Gene ID /WP=CE25922 /GEN=str-145 /TR=Q9GS09 /GB=AAG24138.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 56      4grp_total > 03      6grp_cgc > 27      6grp_cgc_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 12.1
(-2.5)
A 		2.9
(-3)
A 		6.5
(-2.8)
A 		107.4
(3)
P 		105
B 27.5
(-2)
A 		40
(-1.1)
A 		12.6
(-3)
A 		100.2
(3)
M 		88
C 38.5
(-2.5)
A 		29.8
(-3)
A 		30.2
(-3)
A 		134.1
(3)
P 		104
avr 26
(-2.4) 		24.2
(-2.5) 		16.4
(-3) 		113.9
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 41.1
(3)
A 		24
(-2.7)
A 		36.1
(1.3)
A 		23.1
(-3)
A 		29.8
(-0.8)
A 		38.7
(2.2)
A 		18
B 20.7
(-1.2)
A 		38
(2)
A 		28.6
(0.3)
A 		11
(-3)
A 		41.3
(2.6)
A 		43.4
(3)
P 		32
C 36.2
(1.1)
A 		48.1
(3)
A 		37.3
(1.3)
A 		41.3
(1.9)
A 		10.1
(-3)
A 		42.2
(2.1)
A 		38
avr 32.7
(-0.2) 		36.7
(1.3) 		34
(0.3) 		25.1
(-3) 		27.1
(-2.3) 		41.4
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 4.4
(-1.5)
A 		0.6
(-3)
A 		1.7
(-2.6)
A 		15.7
(3)
P 		15
B 8.8
(-1.1)
A 		9.9
(-0.7)
A 		2.9
(-3)
A 		21.4
(3)
M 		19
C 12.7
(-1.2)
A 		8.6
(-3)
A 		10.5
(-2.2)
A 		22.6
(3)
P 		14
avr 8.6
(-1.6) 		6.4
(-2.4) 		5
(-3) 		19.9
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.6
(-0.1)
A 		8.5
(1.5)
A 		7.9
(0.4)
A 		5.9
(-3)
A 		9
(2.3)
A 		9.4
(3)
A 		4
B 7.2
(-1.1)
A 		12.6
(1.2)
A 		6.9
(-1.3)
A 		2.9
(-3)
A 		16.8
(3)
A 		16.2
(2.7)
P 		14
C 13.4
(2.3)
A 		14.7
(3)
A 		9.5
(0.3)
A 		8.3
(-0.4)
A 		3.3
(-3)
A 		14.1
(2.7)
A 		11
avr 9.4
(-0) 		11.9
(2) 		8.1
(-1.1) 		5.7
(-3) 		9.7
(0.2) 		13.2
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191479_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12380
Sequence Type Exemplar sequence
Representative Public ID F58G4.7 NCBI
Target Description F58G4.7 /REP_DB=WormBase Gene ID /WP=CE25922 /GEN=str-145 /TR=Q9GS09 /GB=AAG24138.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072689(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072689 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-145) (str-145) mRNA, complete cds. 11/11 None
SNAP00000010855 ENSEMBL cdna:SNAP chromosome:CEL140:V:8099707:8100930:-1 10/11 None
GENEFINDER00000010863 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8096004:8100852:-1 10/11 None
F58G4.7 ENSEMBL cdna:known chromosome:CEL140:V:8099459:8100930:-1 gene:F58G4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8099459-8100931(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-145
Ensembl F58G4.7
Entrez Gene 192015 Entrez gene
SwissProt Q9GS09 EMBL-EBI
WormBase CE38196 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24138 Seven tm receptor protein 145 [Caenorhabditis elegans] ref|NP_505090.2| Seven TM Receptor family member (str-145) [Caenorhabditis elegans] 0.0
blast AAG24138 Seven tm receptor protein 145 [Caenorhabditis elegans] ref|NP_505090.2| Seven TM Receptor family member (str-145) [Caenorhabditis elegans] 1.0E-177
blast T30006 hypothetical protein F58G4.7 - Caenorhabditis elegans 1.0E-170
blast T30006 hypothetical protein F58G4.7 - Caenorhabditis elegans 1.0E-168
blast T30006 hypothetical protein F58G4.7 - Caenorhabditis elegans 1.0E-164
blast T30006 hypothetical protein F58G4.7 - Caenorhabditis elegans 1.0E-162
blast AAG24138 Seven tm receptor protein 145 [Caenorhabditis elegans] ref|NP_505090.2| Seven TM Receptor family member (str-145) [Caenorhabditis elegans] 1.0E-158
blast AAG24136 Seven tm receptor protein 146 [Caenorhabditis elegans] ref|NP_505089.2| Seven TM Receptor family member (str-146) [Caenorhabditis elegans] 1.0E-141
blast CAE66135 Hypothetical protein CBG11363 [Caenorhabditis briggsae] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.8E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505090.2 6 5-27,40-62,82-104,125-147,194-216,243-265
F58G4.7 6 5-27,34-56,89-111,132-154,200-222,249-271
SNAP00000010855 7 5-27,34-56,89-111,132-154,200-222,249-271,284-306
GENEFINDER00000010863 10 13-31,63-85,106-128,171-193,220-242,305-327,348-370,420-442,465-487,502-524
Sequence
Target Sequence 
>C. ELEGANS:191479_AT
gtgcttcattgcttggtttggatttgtgtactggggaatggctaatacggttgaaaaaca
attgtacatgaaaaatgaactagcagaaaaatataacgaagactctgagaatgtagcgtt
tattgcggttatgtattggtcacttgataaaaatgggcagaaaatttggaagatttggga
tattgcactcttactggcatgtgttgcaacaattggcggctgttttatgacgatagtcta
ttgtgcatcaaggatttacagaaaaatgaaggatacaagtagtcacatgagcgagcggac
actagaactcaatagacagttgtttatcacattgaccattcagacaattttacctctatt
tatgatgtacattcctgttgggttagcaacttctcttccaatctttgagatcaaaaacgg
acggattgccaatttcactgcagccagcttagccgtctatccgtttctagagccactagt
tccaatgatttgcataaaagaattcaaaaaagttattttgtctttcattctgcgtttcat
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTTCATTGCTTGGTTTGGATTT 247 479 438 Antisense
GGGATATTGCACTCTTACTGGCATG 690 495 614 Antisense
GGCGGCTGTTTTATGACGATAGTCT 288 539 652 Antisense
GTAGTCACATGAGCGAGCGGACACT 581 455 716 Antisense
GACCATTCAGACAATTTTACCTCTA 150 383 771 Antisense
GATGTACATTCCTGTTGGGTTAGCA 600 409 801 Antisense
GCAACTTCTCTTCCAATCTTTGAGA 452 319 823 Antisense
ACGGACGGATTGCCAATTTCACTGC 90 97 854 Antisense
CAATTTCACTGCAGCCAGCTTAGCC 30 181 867 Antisense
GAGCCACTAGTTCCAATGATTTGCA 341 385 907 Antisense
TTTGTCTTTCATTCTGCGTTTCATA 535 667 954 Antisense
Sequence Source Affymetrix Proprietary Database