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[191477_at] 7TM chemoreceptor, str family

Description T08B6.7 /REP_DB=WormBase Gene ID /WP=CE17228 /GEN=str-170 /TR=O44533 /GB=AAB94156.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 03      4grp_total > 20      6grp_cgc > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 44.7
(-0.9)
A 		55.4
(-0.3)
A 		9.4
(-3)
A 		110.8
(3)
P 		101
B 50.5
(0.6)
A 		21.7
(-3)
A 		24.9
(-2.6)
A 		70.1
(3)
M 		48
C 44.6
(-1)
A 		57
(-0.4)
A 		5.5
(-3)
A 		123.5
(3)
P 		118
avr 46.6
(-0.7) 		44.7
(-0.9) 		13.3
(-3) 		101.5
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 54.4
(3)
A 		2
(-3)
A 		33.6
(0.6)
A 		32.8
(0.5)
A 		33.7
(0.6)
A 		10
(-2.1)
A 		52
B 38.8
(3)
A 		13.1
(-1.5)
A 		4.7
(-3)
A 		5.2
(-2.9)
A 		34.4
(2.2)
A 		14.6
(-1.3)
A 		34
C 1.5
(-3)
A 		75
(3)
P 		27.8
(-0.9)
A 		40
(0.1)
A 		12.3
(-2.1)
A 		25
(-1.1)
A 		74
avr 31.6
(3) 		30
(2.4) 		22
(-0.8) 		26
(0.8) 		26.8
(1.1) 		16.5
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 16.3
(3)
A 		12
(1.1)
A 		2.5
(-3)
A 		16.2
(3)
P 		14
B 16.1
(3)
A 		5.4
(-3)
A 		5.8
(-2.8)
A 		14.9
(2.3)
M 		11
C 14.8
(1.1)
A 		16.4
(1.6)
A 		1.9
(-3)
A 		20.8
(3)
P 		19
avr 15.7
(2.3) 		11.3
(0.4) 		3.4
(-3) 		17.3
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10
(2.9)
A 		0.7
(-3)
A 		7.3
(1.2)
A 		8.3
(1.8)
A 		10.2
(3)
A 		2.4
(-1.9)
A 		10
B 13.5
(2.8)
A 		4.4
(-1.5)
A 		1.1
(-3)
A 		1.4
(-2.9)
A 		14
(3)
A 		5.4
(-1)
A 		13
C 0.6
(-3)
A 		22.9
(3)
P 		7.1
(-1.3)
A 		8
(-1)
A 		4
(-2.1)
A 		8.4
(-0.9)
A 		22
avr 8
(1) 		9.3
(2.9) 		5.2
(-3) 		5.9
(-2) 		9.4
(3) 		5.4
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191477_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10671
Sequence Type Exemplar sequence
Representative Public ID T08B6.7 NCBI
Target Description T08B6.7 /REP_DB=WormBase Gene ID /WP=CE17228 /GEN=str-170 /TR=O44533 /GB=AAB94156.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068262 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-170) (str-170) mRNA, complete cds. 11/11 None
GENEFINDER00000024955 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4877392:4881720:1 11/11 None
T08B6.7 ENSEMBL cdna:known chromosome:CEL140:IV:4877392:4880305:1 gene:T08B6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024939 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4877397-4880311(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-170
Ensembl T08B6.7
Entrez Gene 192022 Entrez gene
SwissProt O44533 EMBL-EBI
WormBase CE17228 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500663 Seven TM Receptor family member (str-170) [Caenorhabditis elegans] gb|AAB94156.1| Seven tm receptor protein 170 [Caenorhabditis elegans] 0.0
blast NP_500663 Seven TM Receptor family member (str-170) [Caenorhabditis elegans] gb|AAB94156.1| Seven tm receptor protein 170 [Caenorhabditis elegans] 1.0E-176
blast NP_500660 Seven TM Receptor family member (str-172) [Caenorhabditis elegans] gb|AAF60441.2| Seven tm receptor protein 172 [Caenorhabditis elegans] 1.0E-89
blast CAB03270 Hypothetical protein T01G5.5 [Caenorhabditis elegans] emb|CAB03190.1| Hypothetical protein T01G5.5 [Caenorhabditis elegans] ref|NP_506732.1| Seven TM Receptor family member (str-171) [Caenorhabditis elegans] 1.0E-88
blast CAB03270 Hypothetical protein T01G5.5 [Caenorhabditis elegans] emb|CAB03190.1| Hypothetical protein T01G5.5 [Caenorhabditis elegans] ref|NP_506732.1| Seven TM Receptor family member (str-171) [Caenorhabditis elegans] 7.0E-88
blast NP_500660 Seven TM Receptor family member (str-172) [Caenorhabditis elegans] gb|AAF60441.2| Seven tm receptor protein 172 [Caenorhabditis elegans] 3.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.6E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.7E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.4E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500663.1 7 11-33,46-68,93-115,135-157,204-226,259-281,286-308
T08B6.7 7 11-33,46-68,93-115,135-157,204-226,259-281,286-308
GENEFINDER00000024955 7 11-33,46-68,93-115,135-157,204-226,259-281,286-308
Sequence
Target Sequence 
>C. ELEGANS:191477_AT
tttattccaatattcggctgccttaactggacattcatagctggctacttttttgctatg
aatccaatttctacaggatacatcgcgccaatgattgaggaaatgtacaatatctcaata
aatgatgcagcgtactctgcagcagtcttctggccacccaacgagcagggagtcgtggaa
tttcattggagatcaggacttgggttgatcaatttggtgacttctatgtcattgtcattg
tcagtggtgatatatactggagtgaagagtttgaagaaaatcaaacaattattgggaaga
ttggaatcaaagttttcgaaaaacttgcaaatgcaattgtacaaagcgttggtggcacag
accctgatcccagtgcttttcattttcatcccatttggtatcctcttcacttgtccttta
tttctaatcgattgtgaatttctatcagcaccaattacagtaatctatgcagtataccct
gctctggatcctctgccatgtttattttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTATTCCAATATTCGGCTGCCTTA 696 673 427 Antisense
GGCTGCCTTAACTGGACATTCATAG 664 539 442 Antisense
GCTGGCTACTTTTTTGCTATGAATC 138 295 466 Antisense
ATTTCTACAGGATACATCGCGCCAA 189 17 493 Antisense
CAGCGTACTCTGCAGCAGTCTTCTG 75 203 554 Antisense
CAAAGCGTTGGTGGCACAGACCCTG 514 191 768 Antisense
TGATCCCAGTGCTTTTCATTTTCAT 145 565 791 Antisense
TTCATCCCATTTGGTATCCTCTTCA 216 689 811 Antisense
TCTTCACTTGTCCTTTATTTCTAAT 10 617 830 Antisense
ATGCAGTATACCCTGCTCTGGATCC 640 43 893 Antisense
GATCCTCTGCCATGTTTATTTTTTG 14 417 913 Antisense
Sequence Source Affymetrix Proprietary Database