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[191476_at] 7TM chemoreceptor, srh family

Description F31F4.9 /REP_DB=WormBase Gene ID /WP=CE24933 /GEN=srh-245 /TR=O17126 /GB=AAG24097.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 0      4grp_total > 18      6grp_total_sub > Hat      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 4.5
(-2.9)
A 		4.1
(-3)
A 		10.1
(-1.9)
A 		36.8
(3)
A 		33
B 5.1
(-3)
A 		48
(0.7)
A 		18.5
(-1.8)
A 		74.3
(3)
P 		69
C 10.3
(-2.6)
A 		26.3
(-1.6)
A 		3
(-3)
A 		100.9
(3)
P 		98
avr 6.6
(-3) 		26.1
(-1.2) 		10.5
(-2.6) 		70.7
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 6.7
(-1.7)
A 		4.2
(-2.3)
A 		25.8
(3)
A 		1.4
(-3)
A 		1.8
(-2.9)
A 		13.1
(-0.1)
A 		24
B 4.2
(-2.6)
A 		23
(3)
A 		2.7
(-3)
A 		4
(-2.6)
A 		9.3
(-1)
A 		11.8
(-0.3)
A 		20
C 2
(-2.8)
A 		16.2
(2.6)
A 		1.6
(-3)
A 		17.2
(3)
A 		1.5
(-3)
A 		9.8
(0.2)
A 		16
avr 4.3
(-2.9) 		14.5
(3) 		10
(0.4) 		7.5
(-1.1) 		4.2
(-3) 		11.6
(1.3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.6
(-2.1)
A 		0.9
(-3)
A 		2.7
(-0.6)
A 		5.4
(3)
A 		5
B 1.6
(-3)
A 		11.9
(1.4)
A 		4.3
(-1.9)
A 		15.8
(3)
P 		14
C 3.4
(-2.1)
A 		7.5
(-0.6)
A 		1
(-3)
A 		17
(3)
P 		16
avr 2.2
(-3) 		6.8
(-0.4) 		2.7
(-2.7) 		12.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.2
(-2)
A 		1.5
(-1.6)
A 		5.6
(3)
A 		0.3
(-3)
A 		0.6
(-2.7)
A 		3.2
(0.3)
A 		5
B 1.5
(-2.3)
A 		7.7
(3)
A 		0.7
(-3)
A 		1.1
(-2.7)
A 		3.8
(-0.3)
A 		4.4
(0.2)
A 		7
C 0.7
(-2.6)
A 		4.9
(3)
A 		0.4
(-3)
A 		3.5
(1.1)
A 		0.5
(-2.9)
A 		3.3
(0.9)
A 		5
avr 1.1
(-3) 		4.7
(3) 		2.2
(-1.2) 		1.6
(-2.2) 		1.6
(-2.2) 		3.6
(1.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191476_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15570
Sequence Type Exemplar sequence
Representative Public ID F31F4.9 NCBI
Target Description F31F4.9 /REP_DB=WormBase Gene ID /WP=CE24933 /GEN=srh-245 /TR=O17126 /GB=AAG24097.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070880(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070880 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-245) (srh-245) mRNA, complete cds. 11/11 None
SNAP00000012362 ENSEMBL cdna:SNAP chromosome:CEL140:V:654557:655753:-1 11/11 None
F31F4.9 ENSEMBL cdna:known chromosome:CEL140:V:654557:655753:-1 gene:F31F4.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012378 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:654556-655753(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-245
Ensembl F31F4.9
Entrez Gene 191892 Entrez gene
SwissProt O17126 EMBL-EBI
WormBase CE24933 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503281 Serpentine Receptor, class H family member (srh-245) [Caenorhabditis elegans] gb|AAG24097.1| Serpentine receptor, class h protein 245 [Caenorhabditis elegans] 1.0E-167
blast NP_503282 Serpentine Receptor, class H family member (srh-246) [Caenorhabditis elegans] gb|AAG24096.1| Serpentine receptor, class h protein 246 [Caenorhabditis elegans] 1.0E-133
blast T32306 hypothetical protein F31F4.9 - Caenorhabditis elegans 1.0E-127
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.5E-117
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503281.1 7 20-42,55-77,92-114,135-154,190-212,240-262,272-294
F31F4.9 7 20-42,55-77,92-114,135-154,190-212,240-262,272-294
SNAP00000012362 7 20-42,55-77,92-114,135-154,190-212,240-262,272-294
Sequence
Target Sequence 
>C. ELEGANS:191476_AT
gaaatcatcccaatggtctcgggtccgaaaacctcttcgctttactatcttcttagctgt
ttccactatcctaatgatcccttttctattgatgccggagcaagaagccgctagagctct
agttctcgaaagaattccatgcctcaaatatatcaaaacccatggcagaaagatgtttgt
ttttgcaattgatcctattatgacaacgataggggctactgtactggcaactgccctgac
aactccgacagttacgtttttcattttgacgctgaaaaatctattcaaggagaacaagct
tttcaatatatctcggaagacattcgaggctcaacaaactttcttcaaggcgatcacgat
tcagtttgtgttcttcttgctaatgatgatcagtccaattataatgattttgataattga
tttcacagcttatcacaaccaagtgctcaataatatcgtactttttccactgtatctctc
gggaattttgtccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCATCCCAATGGTCTCGGGTC 240 363 381 Antisense
CTCTTCGCTTTACTATCTTCTTAGC 95 231 413 Antisense
TATCTTCTTAGCTGTTTCCACTATC 459 659 426 Antisense
TTCCACTATCCTAATGATCCCTTTT 176 701 441 Antisense
GATCCCTTTTCTATTGATGCCGGAG 155 415 456 Antisense
AGGGGCTACTGTACTGGCAACTGCC 326 57 591 Antisense
CCCTGACAACTCCGACAGTTACGTT 24 259 614 Antisense
CATTCGAGGCTCAACAAACTTTCTT 174 217 701 Antisense
GATTCAGTTTGTGTTCTTCTTGCTA 474 431 738 Antisense
TATCGTACTTTTTCCACTGTATCTC 34 659 834 Antisense
GTATCTCTCGGGAATTTTGTCCACA 148 455 852 Antisense
Sequence Source Affymetrix Proprietary Database