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[191475_s_at] 7TM chemoreceptor, srh family /// 7TM chemoreceptor, srh family

Description H27D07.6 /REP_DB=WormBase Gene ID /WP=CE25035 /GEN=srh-87 /TR=Q9GUB8 /GB=AAG24157.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 54      4grp_total > 02      6grp_cgc > 91      6grp_cgc_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 19.2
(-0.2)
A 		14.2
(-1)
A 		2
(-3)
A 		38.4
(3)
A 		36
B 2.2
(-3)
A 		6.6
(-2.6)
A 		29.7
(-0.6)
A 		71.5
(3)
P 		69
C 1.5
(-3)
A 		8.7
(-2.7)
A 		0.8
(-3)
A 		150.4
(3)
P 		150
avr 7.6
(-3) 		9.8
(-2.8) 		10.8
(-2.8) 		86.8
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.3
(-3)
A 		1.3
(-3)
A 		15.1
(3)
A 		1.9
(-2.7)
A 		3.2
(-2.2)
A 		2.6
(-2.4)
A 		14
B 9
(1.6)
A 		3.3
(-1.9)
A 		11.3
(3)
A 		1.5
(-3)
A 		1.5
(-3)
A 		11.2
(2.9)
A 		10
C 2.1
(-2.2)
A 		7.5
(3)
A 		5.8
(1.4)
A 		2.2
(-2.1)
A 		1.3
(-3)
A 		1.3
(-3)
A 		6
avr 4.1
(-1.5) 		4
(-1.6) 		10.7
(3) 		1.9
(-3) 		2
(-2.9) 		5
(-0.9) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 7
(3)
A 		3.1
(-0.6)
A 		0.5
(-3)
A 		5.6
(1.7)
A 		7
B 0.7
(-3)
A 		1.6
(-2.6)
A 		6.9
(-0.4)
A 		15.2
(3)
P 		15
C 0.5
(-3)
A 		2.5
(-2.5)
A 		0.3
(-3)
A 		25.4
(3)
P 		25
avr 2.7
(-2.9) 		2.4
(-3) 		2.6
(-2.9) 		15.4
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.5
(-2.4)
A 		3.3
(3)
A 		0.5
(-2.4)
A 		1
(-1.5)
A 		0.6
(-2.2)
A 		3
B 3.1
(1.3)
A 		1.1
(-1.9)
A 		2.8
(0.8)
A 		0.4
(-3)
A 		0.6
(-2.7)
A 		4.2
(3)
A 		4
C 0.8
(-1.7)
A 		2.3
(3)
A 		1.5
(0.5)
A 		0.5
(-2.7)
A 		0.4
(-3)
A 		0.4
(-3)
A 		2
avr 1.4
(-0.3) 		1.3
(-0.6) 		2.5
(3) 		0.5
(-3) 		0.7
(-2.4) 		1.7
(0.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191475_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15953
Sequence Type Exemplar sequence
Representative Public ID H27D07.6 NCBI
Target Description H27D07.6 /REP_DB=WormBase Gene ID /WP=CE25035 /GEN=srh-87 /TR=Q9GUB8 /GB=AAG24157.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071399(11), NM_071406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071399 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-87) (srh-87) mRNA, complete cds. 11/11 A 
NM_071406 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-88) (srh-88) mRNA, complete cds. 11/11 A 
H27D07.6 ENSEMBL cdna:known chromosome:CEL140:V:2944206:2945509:-1 gene:H27D07.6 11/11 A 
C44C3.9 ENSEMBL cdna:known chromosome:CEL140:V:2963393:2964713:-1 gene:C44C3.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011852 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2944205-2945509(-) 100.0 100.0
chrV:2963392-2964713(-) 92.14 92.14
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
7TM chemoreceptor, srh family
Gene Symbol srh-88
srh-87
Ensembl H27D07.6
C44C3.9
Entrez Gene 191876 Entrez gene
191877 Entrez gene
SwissProt Q8IFY2 EMBL-EBI
Q9GUB8 EMBL-EBI
WormBase CE24849 Wormbase
CE25035 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24157 Serpentine receptor, class h protein 87 [Caenorhabditis elegans] ref|NP_503800.1| Serpentine Receptor, class H family member (srh-87) [Caenorhabditis elegans] 0.0
blast AAN73869 Serpentine receptor, class h protein 88 [Caenorhabditis elegans] ref|NP_503807.1| Serpentine Receptor, class H family member (srh-88) [Caenorhabditis elegans] 0.0
blast T33244 hypothetical protein H27D07.4 - Caenorhabditis elegans 0.0
blast AAG24157 Serpentine receptor, class h protein 87 [Caenorhabditis elegans] ref|NP_503800.1| Serpentine Receptor, class H family member (srh-87) [Caenorhabditis elegans] 1.0E-179
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503800.1 7 30-52,77-99,109-131,151-173,209-240,260-282,292-314
NP_503807.1 7 30-52,77-99,109-131,152-171,217-239,259-281,296-318
H27D07.6 7 30-52,77-99,109-131,151-173,209-240,260-282,292-314
C44C3.9 7 30-52,77-99,109-131,152-171,217-239,259-281,296-318
Sequence
Target Sequence 
>C. ELEGANS:191475_S_AT
tcattcacatttttcataccagcaaaccaggaagaagcactctttaaagttctcagacgg
cttccatgtccttctcaagactttttcacggcttccaatatttttgtattgtgcatcgat
gattatcatattcattttttaattgccttcacagtattaggagttgtggtagaagtgatt
caaattttgttttacttgacatgttgtgtctactatttgtttttctcgattcgttcgttt
acttcaaagaccacgagaaagttgcaaattaaatttttggcaagcatacttctacaaatt
tcaattcctgttttgttcatgttaccgaccgctttttatatttggtttgctgttgatttt
aattattataatcaagcattaaccaatttgtcaattcttcatgcttcaattcatggctta
atatctacagtcgctgtactcattatacatcatccttatcggcagttcgttttgtcatat
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTCACATTTTTCATACCAGCAA 518 619 508 Antisense
AATTGCCTTCACAGTATTAGGAGTT 426 177 648 Antisense
CAAATTTTGTTTTACTTGACATGTT 622 193 688 Antisense
TACTATTTGTTTTTCTCGATTCGTT 153 645 718 Antisense
TTCTCGATTCGTTCGTTTACTTCAA 396 693 730 Antisense
TCGTTCGTTTACTTCAAAGACCACG 356 601 738 Antisense
GCAAGCATACTTCTACAAATTTCAA 610 319 787 Antisense
TTCATGTTACCGACCGCTTTTTATA 258 689 823 Antisense
TTCAATTCATGGCTTAATATCTACA 497 685 912 Antisense
ATCCTTATCGGCAGTTCGTTTTGTC 350 39 959 Antisense
ATCGGCAGTTCGTTTTGTCATATTT 359 35 965 Antisense
Sequence Source Affymetrix Proprietary Database