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[191474_at] 7TM chemoreceptor, srh family

Description H27D07.6 /REP_DB=WormBase Gene ID /WP=CE25035 /GEN=srh-87 /TR=Q9GUB8 /GB=AAG24157.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 76      4grp_total > 01      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 14.5
(-1.6)
A 		3.2
(-2.8)
A 		1.6
(-3)
A 		56.6
(3)
A 		55
B 1.8
(-3)
A 		7.9
(-2.3)
A 		21.7
(-0.6)
A 		50.8
(3)
A 		49
C 1.4
(-3)
A 		3.1
(-2.8)
A 		2.7
(-2.9)
A 		68.9
(3)
M 		68
avr 5.9
(-2.9) 		4.7
(-3) 		8.7
(-2.6) 		58.8
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.1
(-2.3)
A 		1.5
(-3)
A 		2.7
(-1.6)
A 		2.4
(-1.9)
A 		2.5
(-1.8)
A 		6.6
(3)
A 		5
B 2
(-2.5)
A 		7.4
(3)
A 		2.5
(-2)
A 		1.7
(-2.8)
A 		1.5
(-3)
A 		3.2
(-1.3)
A 		6
C 3.1
(-2.7)
A 		5.7
(-1.9)
A 		1.9
(-3)
A 		10.6
(-0.6)
A 		8.7
(-1.1)
A 		23.3
(3)
A 		21
avr 2.4
(-3) 		4.9
(-1.3) 		2.4
(-3) 		4.9
(-1.3) 		4.2
(-1.7) 		11
(3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.3
(0.7)
A 		0.7
(-2.8)
A 		0.4
(-3)
A 		8.3
(3)
A 		8
B 0.6
(-3)
A 		2
(-2.2)
A 		5
(-0.4)
A 		10.8
(3)
A 		10
C 0.5
(-3)
A 		0.9
(-2.8)
A 		0.9
(-2.8)
A 		11.6
(3)
M 		11
avr 2.1
(-2.4) 		1.2
(-3) 		2.1
(-2.4) 		10.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.5
(-2.5)
A 		0.6
(-2)
A 		0.6
(-2)
A 		0.7
(-1.5)
A 		1.6
(3)
A 		1
B 0.7
(-2.1)
A 		2.5
(3)
A 		0.6
(-2.4)
A 		0.4
(-3)
A 		0.6
(-2.4)
A 		1.2
(-0.7)
A 		2
C 1.2
(-2.4)
A 		1.7
(-2)
A 		0.5
(-3)
A 		2.1
(-1.7)
A 		2.8
(-1.1)
A 		7.8
(3)
A 		7
avr 0.8
(-2.6) 		1.6
(-0.9) 		0.6
(-3) 		1
(-2.2) 		1.4
(-1.3) 		3.5
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191474_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15953
Sequence Type Exemplar sequence
Representative Public ID H27D07.6 NCBI
Target Description H27D07.6 /REP_DB=WormBase Gene ID /WP=CE25035 /GEN=srh-87 /TR=Q9GUB8 /GB=AAG24157.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071399 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-87) (srh-87) mRNA, complete cds. 11/11 A 
H27D07.6 ENSEMBL cdna:known chromosome:CEL140:V:2944206:2945509:-1 gene:H27D07.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2944205-2945509(-) 100.0 100.0
chrV:2963392-2964713(-) 92.14 92.14
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-87
Ensembl H27D07.6
Entrez Gene 191876 Entrez gene
SwissProt Q9GUB8 EMBL-EBI
WormBase CE25035 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24157 Serpentine receptor, class h protein 87 [Caenorhabditis elegans] ref|NP_503800.1| Serpentine Receptor, class H family member (srh-87) [Caenorhabditis elegans] 0.0
blast AAN73869 Serpentine receptor, class h protein 88 [Caenorhabditis elegans] ref|NP_503807.1| Serpentine Receptor, class H family member (srh-88) [Caenorhabditis elegans] 0.0
blast T33244 hypothetical protein H27D07.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503800.1 7 30-52,77-99,109-131,151-173,209-240,260-282,292-314
H27D07.6 7 30-52,77-99,109-131,151-173,209-240,260-282,292-314
Sequence
Target Sequence 
>C. ELEGANS:191474_AT
gagtattttacgcagcatcattcacatttttcataccagcaaaccaggaagaagcactct
ttaaagttctcagacggcttccatgtccttctcaagactttttcacggcttccaatattt
ttgtattgtgcatcgatgattatcatattcattttttaattgccttcacagtattaggag
ttgtggtagaagtgattcaaattttgttttacttgacatgttgtgtctactatttgtttt
tctcgattcgttcgtttacttcaaagaccacgagaaagttgcaaattaaatttttggcaa
gcatacttctacaaatttcaattcctgttttgttcatgttaccgaccgctttttatattt
ggtttgctgttgattttaattattataatcaagcattaaccaatttgtcaattcttcatg
cttcaattcatggcttaatatctacagtcgctgtactcattatacatcatccttatcggc
agttcgttttgtcatatttctggaaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTATTTTACGCAGCATCATTCAC 348 399 491 Antisense
GCAAACCAGGAAGAAGCACTCTTTA 577 317 529 Antisense
GCACTCTTTAAAGTTCTCAGACGGC 5 315 544 Antisense
AGACTTTTTCACGGCTTCCAATATT 382 65 585 Antisense
TGTATTGTGCATCGATGATTATCAT 308 561 612 Antisense
TACTTGACATGTTGTGTCTACTATT 517 645 700 Antisense
ATATTTGGTTTGCTGTTGATTTTAA 588 19 845 Antisense
GGCTTAATATCTACAGTCGCTGTAC 614 535 922 Antisense
GTCGCTGTACTCATTATACATCATC 507 475 937 Antisense
ACTCATTATACATCATCCTTATCGG 568 99 945 Antisense
CGTTTTGTCATATTTCTGGAAATCT 453 247 975 Antisense
Sequence Source Affymetrix Proprietary Database