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[191473_s_at] 7TM chemoreceptor, str family /// chemoreceptor

Description C13B7.5 /REP_DB=WormBase Gene ID /WP=CE20503 /GEN=str-119 /TR=Q9UAU7 /GB=AAD14710.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 20      4grp_total > 43      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 13.4
(-3)
A 		104.4
(3)
A 		34.5
(-1.6)
A 		46.4
(-0.8)
A 		91
B 49.6
(3)
A 		17.2
(-2.4)
A 		36.4
(0.8)
A 		13.3
(-3)
A 		36
C 32.2
(-1.6)
A 		90.9
(3)
A 		15.1
(-3)
A 		33
(-1.6)
A 		76
avr 31.7
(-2.6) 		70.8
(3) 		28.7
(-3) 		30.9
(-2.7) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 13.6
(3)
A 		7.9
(-1.6)
A 		6.6
(-2.6)
A 		6.1
(-3)
A 		13.1
(2.6)
A 		7.2
(-2.1)
A 		8
B 12.4
(-1.4)
A 		22.3
(-0)
A 		23.7
(0.2)
A 		9.2
(-1.9)
A 		43.4
(3)
A 		1.4
(-3)
A 		42
C 26.7
(-0.5)
A 		53.7
(2.5)
A 		40.5
(1)
A 		57.7
(3)
A 		4.9
(-3)
A 		28.8
(-0.3)
A 		53
avr 17.6
(-1) 		28
(3) 		23.6
(1.3) 		24.3
(1.6) 		20.5
(0.1) 		12.5
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 4.9
(-3)
A 		22.7
(3)
A 		9
(-1.6)
A 		6.8
(-2.4)
A 		18
B 15.8
(3)
A 		4.2
(-2.4)
A 		8.4
(-0.4)
A 		2.8
(-3)
A 		13
C 10.6
(-1.5)
A 		26.1
(3)
A 		5.3
(-3)
A 		5.6
(-2.9)
A 		21
avr 10.4
(-0.5) 		17.7
(3) 		7.6
(-1.8) 		5.1
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.5
(-0.5)
A 		2.8
(0.2)
A 		1.4
(-3)
A 		1.5
(-2.8)
A 		4
(3)
A 		1.8
(-2.1)
A 		3
B 4.3
(-1.7)
A 		7.4
(-0.6)
A 		5.8
(-1.1)
A 		2.4
(-2.3)
A 		17.6
(3)
A 		0.5
(-3)
A 		17
C 9.9
(0.4)
A 		16.4
(3)
A 		10.3
(0.5)
A 		11.6
(1.1)
A 		1.6
(-3)
A 		9.6
(0.2)
A 		15
avr 5.6
(-1) 		8.9
(3) 		5.8
(-0.8) 		5.2
(-1.5) 		7.7
(1.5) 		4
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191473_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14841
Sequence Type Exemplar sequence
Representative Public ID C13B7.5 NCBI
Target Description C13B7.5 /REP_DB=WormBase Gene ID /WP=CE20503 /GEN=str-119 /TR=Q9UAU7 /GB=AAD14710.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071292(11), NM_071265(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071292 NCBI Caenorhabditis elegans Y45G12C.10 (chemoreceptor) mRNA, complete cds. 11/11 None
NM_071265 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-119) (str-119) mRNA, complete cds. 11/11 None
SNAP00000022917 ENSEMBL cdna:SNAP chromosome:CEL140:V:2426566:2429175:-1 11/11 None
GENEFINDER00000022922 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2423242:2427958:-1 11/11 None
SNAP00000043310 ENSEMBL cdna:SNAP chromosome:CEL140:V:2534845:2537454:-1 11/11 None
GENEFINDER00000043325 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2531521:2536237:-1 11/11 None
C13B7.5 ENSEMBL cdna:known chromosome:CEL140:V:2426307:2427952:-1 gene:C13B7.5 11/11 None
Y45G12C.10 ENSEMBL cdna:known chromosome:CEL140:V:2534586:2536237:-1 gene:Y45G12C.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2426306-2427952(-) 100.0 100.0
chrV:2534585-2536231(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
chemoreceptor
Gene Symbol str-119
Ensembl C13B7.5
Y45G12C.10
Entrez Gene 189938 Entrez gene
192000 Entrez gene
SwissProt Q9UAU7 EMBL-EBI
Q9N4Y5 EMBL-EBI
WormBase CE20503 Wormbase
CE37430 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503693 Y45G12C.10 [Caenorhabditis elegans] gb|AAF60577.2| Hypothetical protein Y45G12C.10 [Caenorhabditis elegans] 0.0
blast AAD14710 Seven tm receptor protein 119 [Caenorhabditis elegans] ref|NP_503666.1| Seven TM Receptor family member (str-119) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.2E-87
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.2E-87
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.0E-42
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503693.2 7 10-30,43-65,85-107,128-150,203-225,246-268,283-303
NP_503666.1 7 6-28,41-63,83-105,126-148,201-223,244-266,281-301
C13B7.5 7 6-28,41-63,83-105,126-148,201-223,244-266,281-301
Y45G12C.10 7 10-30,43-65,85-107,128-150,203-225,246-268,283-303
SNAP00000022917 4 12-34,89-111,132-154,169-188
GENEFINDER00000022922 11 10-30,43-65,85-107,128-150,203-225,246-268,283-303,338-360,365-387,408-430,458-480
SNAP00000043310 4 12-34,89-111,132-154,169-188
GENEFINDER00000043325 11 10-30,43-65,85-107,128-150,203-225,246-268,283-303,338-360,365-387,408-430,458-480
Sequence
Target Sequence 
>C. ELEGANS:191473_S_AT
gcagccgttctcggaacaacttggcttgtgactgtggagatttgcgaacagccaacacca
tttaattcagagtatttgagggaaagtctgaaattttattatgatgaggacagttatgcc
gttgctcaattgtcggcagtttattattactatgacaagtgtggtgttctggtaattcac
tggctgcaatgtttctccatattgatcctctactcgatcatgggcacatccatcacatcc
atcgtacttttcgcgttcaaaacctacaagaccgtccagacgaataccctaatgagtgct
gcgacccgggatcttcaccgtcagcttctattcactcttatcatacaatcactggtgcca
tttgtgatattgttcgcgccagttggactattgtttcttcttccgttcttcaacgtgcat
ttgggctactttgcgaatgctcccggagcttggattagcttttatccggccattgacgca
ctgatcgcgttgctgatgattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCCGTTCTCGGAACAACTTGGC 424 313 415 Antisense
AGGACAGTTATGCCGTTGCTCAATT 565 55 521 Antisense
AATTCACTGGCTGCAATGTTTCTCC 4 177 588 Antisense
TCTCCATATTGATCCTCTACTCGAT 540 607 608 Antisense
TCAAAACCTACAAGACCGTCCAGAC 507 627 671 Antisense
GAATACCCTAATGAGTGCTGCGACC 247 325 696 Antisense
TCAGCTTCTATTCACTCTTATCATA 415 625 735 Antisense
GATATTGTTCGCGCCAGTTGGACTA 375 427 780 Antisense
GTTGGACTATTGTTTCTTCTTCCGT 43 437 796 Antisense
TTGGGCTACTTTGCGAATGCTCCCG 517 707 835 Antisense
GCACTGATCGCGTTGCTGATGATTC 513 315 892 Antisense
Sequence Source Affymetrix Proprietary Database