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[191471_at] 7TM chemoreceptor, sri family

Description T10D4.10 /REP_DB=WormBase Gene ID /WP=CE25986 /GEN=sri-43 /TR=Q9TZE8 /GB=AAC68712.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 80      4grp_total > 27      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 22.8
(-2.2)
A 		77.3
(2.3)
A 		13.3
(-3)
A 		86.2
(3)
A 		73
B 17.8
(-1.8)
A 		28.2
(3)
A 		25.5
(1.8)
A 		15.2
(-3)
A 		13
C 25
(1.7)
A 		28.8
(3)
A 		11.6
(-3)
A 		28.2
(2.8)
A 		17
avr 21.9
(-1.9) 		44.8
(3) 		16.8
(-3) 		43.2
(2.7) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 21.4
(3)
A 		9.2
(-3)
A 		9.3
(-3)
A 		12.9
(-1.2)
A 		16.2
(0.4)
A 		13.4
(-0.9)
A 		12
B 13.6
(2.1)
A 		10.4
(-3)
A 		12.7
(0.6)
A 		12.2
(-0.2)
A 		12.4
(0.2)
A 		14.2
(3)
A 		4
C 9.7
(-3)
A 		15.5
(-1)
A 		19.1
(0.3)
A 		26.7
(3)
A 		11.9
(-2.2)
A 		9.8
(-3)
A 		17
avr 14.9
(0.4) 		11.7
(-3) 		13.7
(-0.9) 		17.3
(3) 		13.5
(-1.1) 		12.5
(-2.1) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.3
(-0.8)
A 		16.8
(3)
A 		3.5
(-3)
A 		12.6
(1.1)
A 		13
B 5.7
(0.9)
A 		7
(3)
A 		5.9
(1.3)
A 		3.2
(-3)
A 		4
C 8.3
(3)
A 		8.3
(3)
A 		4.1
(-3)
A 		4.8
(-2)
A 		4
avr 7.4
(-0.2) 		10.7
(3) 		4.5
(-3) 		6.9
(-0.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 4
(1.1)
A 		3.3
(-0.3)
A 		2
(-3)
A 		3.3
(-0.3)
A 		4.9
(3)
A 		3.3
(-0.3)
A 		3
B 4.7
(1.4)
A 		3.5
(-1.9)
A 		3.1
(-3)
A 		3.2
(-2.7)
A 		5
(2.2)
A 		5.3
(3)
A 		2
C 3.6
(-2.1)
A 		4.7
(1)
A 		4.9
(1.6)
A 		5.4
(3)
A 		3.9
(-1.3)
A 		3.3
(-3)
A 		2
avr 4.1
(0.7) 		3.8
(-0.7) 		3.3
(-3) 		4
(0.2) 		4.6
(3) 		4
(0.2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4761
Sequence Type Exemplar sequence
Representative Public ID T10D4.10 NCBI
Target Description T10D4.10 /REP_DB=WormBase Gene ID /WP=CE25986 /GEN=sri-43 /TR=Q9TZE8 /GB=AAC68712.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062057(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062057 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-43) (sri-43) mRNA, complete cds. 11/11 None
SNAP00000032460 ENSEMBL cdna:SNAP chromosome:CEL140:II:3143577:3143921:-1 9/11 None
GENEFINDER00000032476 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3143032:3149616:-1 11/11 None
T10D4.10 ENSEMBL cdna:known chromosome:CEL140:II:3143389:3144647:-1 gene:T10D4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3143387-3144646(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-43
Ensembl T10D4.10
Entrez Gene 191916 Entrez gene
SwissProt Q9TZE8 EMBL-EBI
WormBase CE25986 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68712 Serpentine receptor, class i protein 43 [Caenorhabditis elegans] ref|NP_494458.1| Serpentine Receptor, class I family member (sri-43) [Caenorhabditis elegans] 1.0E-173
blast AAC68712 Serpentine receptor, class i protein 43 [Caenorhabditis elegans] ref|NP_494458.1| Serpentine Receptor, class I family member (sri-43) [Caenorhabditis elegans] 1.0E-135
blast AAC68720 Serpentine receptor, class i protein 42 [Caenorhabditis elegans] ref|NP_494457.1| Serpentine Receptor, class I family member (sri-42) [Caenorhabditis elegans] 1.0E-134
blast AAC68720 Serpentine receptor, class i protein 42 [Caenorhabditis elegans] ref|NP_494457.1| Serpentine Receptor, class I family member (sri-42) [Caenorhabditis elegans] 1.0E-103
blast AAC68721 Hypothetical protein T10D4.11 [Caenorhabditis elegans] ref|NP_494459.1| T10D4.11 [Caenorhabditis elegans] 5.0E-88
blast AAB66154 Serpentine receptor, class i protein 45 [Caenorhabditis elegans] ref|NP_493782.2| Serpentine Receptor, class I family member (sri-45) [Caenorhabditis elegans] 2.0E-62
blast AAC68712 Serpentine receptor, class i protein 43 [Caenorhabditis elegans] ref|NP_494458.1| Serpentine Receptor, class I family member (sri-43) [Caenorhabditis elegans] 1.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.4E-64
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.2E-16
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.1E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494458.1 6 10-32,44-66,86-108,129-151,186-208,235-257
T10D4.10 6 10-32,44-66,86-108,129-151,186-208,235-257
SNAP00000032460 2 23-45,72-94
GENEFINDER00000032476 5 324-346,356-378,399-421,473-495,522-544
Sequence
Target Sequence 
>C. ELEGANS:191471_AT
ttgagctagcttgtccagtggctgcgtgcatttgttatttctatacaggagtggagcagg
agaaggttgagggatttatcgatcagatgtaccccgatcacaaaaccgaactcttatccc
ttcaaaactacgtgatctaccgagaaaacactgtctatatgatattcttcgtgattttca
aaatgcttgccggatcccttgtctttctactaattgcactcgccaccttggacatgcaga
aaatgctgagcccagttcgtcggaagctatcaattcaaaactacaaccaccacaagaaag
tcatcaatagcctcctggcccagtttgccgccgttttggtacttctactgcctggtttag
cattctacacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGCTAGCTTGTCCAGTGGCTGC 706 703 416 Antisense
GTCCAGTGGCTGCGTGCATTTGTTA 250 477 428 Antisense
TTTCAAAATGCTTGCCGGATCCCTT 232 673 591 Antisense
ATCCCTTGTCTTTCTACTAATTGCA 181 39 609 Antisense
ACTCGCCACCTTGGACATGCAGAAA 231 99 633 Antisense
GAAAATGCTGAGCCCAGTTCGTCGG 371 353 654 Antisense
GCCCAGTTCGTCGGAAGCTATCAAT 255 285 665 Antisense
TCAATTCAAAACTACAACCACCACA 533 633 685 Antisense
AGAAAGTCATCAATAGCCTCCTGGC 224 73 710 Antisense
GTACTTCTACTGCCTGGTTTAGCAT 592 459 754 Antisense
TGCCTGGTTTAGCATTCTACACAAC 218 583 764 Antisense
Sequence Source Affymetrix Proprietary Database