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[191470_s_at]

Description C31C9.1 /REP_DB=WormBase Gene ID /WP=CE08496 /TR=O01986 /GB=CAB02296.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=apical gut membrane protein
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      6grp_highest_nonorm > 41      6grp_total > 06      4grp_total > 61      6grp_highest_sub > De      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1718
1 2 3 4 range
A 1782.8
(3)
P 		1160.1
(0.8)
P 		1475.5
(1.9)
P 		65
(-3)
A 		1718
B 1541.5
(3)
P 		1044.2
(1)
P 		1342.7
(2.2)
P 		83.5
(-3)
A 		1458
C 1511.2
(3)
P 		1331.4
(2.2)
P 		1212.2
(1.7)
P 		76.9
(-3)
A 		1434
avr 1611.8
(3) 		1178.6
(1.3) 		1343.5
(2) 		75.1
(-3) 		1537

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 860
1 2 3 4 5 6 range
A 896.4
(3)
P 		746.5
(0.9)
P 		697.9
(0.2)
P 		587.1
(-1.4)
P 		525.7
(-2.3)
P 		474
(-3)
P 		422
B 1041.7
(3)
P 		618.5
(-0.9)
P 		631.2
(-0.7)
P 		541.1
(-1.6)
P 		860.5
(1.3)
P 		383.2
(-3)
P 		659
C 1235.2
(3)
P 		798.9
(-0)
P 		877.8
(0.5)
P 		471.7
(-2.3)
P 		751.3
(-0.4)
P 		375
(-3)
P 		860
avr 1057.8
(3) 		721.3
(-0.1) 		735.6
(0) 		533.3
(-1.9) 		712.5
(-0.2) 		410.7
(-3) 		647
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 640
1 2 3 4 range
A 649.1
(3)
P 		251.8
(-0.7)
P 		385.7
(0.5)
P 		9.5
(-3)
A 		640
B 491.6
(3)
P 		257.9
(0)
P 		311.1
(0.7)
P 		17.8
(-3)
A 		474
C 500.2
(3)
P 		382.8
(1.6)
P 		422.5
(2)
P 		13
(-3)
A 		487
avr 547
(3) 		297.5
(0.2) 		373.1
(1) 		13.4
(-3) 		534

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 363
1 2 3 4 5 6 range
A 165.2
(-1)
P 		265.5
(3)
P 		152
(-1.5)
P 		148.9
(-1.7)
P 		158.6
(-1.3)
P 		115.4
(-3)
P 		150
B 362.5
(3)
P 		205.9
(-1.3)
P 		153.3
(-2.7)
P 		143.3
(-3)
P 		349.6
(2.6)
P 		142.9
(-3)
P 		220
C 457.8
(3)
P 		243.8
(-0.5)
P 		223.4
(-0.9)
P 		94.9
(-3)
P 		243.1
(-0.5)
P 		125.5
(-2.5)
P 		363
avr 328.5
(3) 		238.4
(0.3) 		176.2
(-1.6) 		129
(-3) 		250.4
(0.7) 		127.9
(-3) 		201
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191470_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3127
Sequence Type Exemplar sequence
Representative Public ID C31C9.1 NCBI
Target Description C31C9.1 /REP_DB=WormBase Gene ID /WP=CE08496 /TR=O01986 /GB=CAB02296.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=apical gut membrane protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064466(11), NM_182157(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064466 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-10) (tag-10) mRNA, complete cds. 11/11 A 
NM_182157 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-10) (tag-10) mRNA, complete cds. 11/11 A 
SNAP00000002042 ENSEMBL cdna:SNAP chromosome:CEL140:II:13635436:13636720:1 11/11 None
GENEFINDER00000002053 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13635436:13636814:1 11/11 None
C31C9.1a ENSEMBL cdna:known chromosome:CEL140:II:13632551:13636878:1 gene:C31C9.1 11/11 A 
C31C9.1b ENSEMBL cdna:known chromosome:CEL140:II:13632558:13636857:1 gene:C31C9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13632554-13635663(+) 100.0 100.0
Public Domain and Genome References
Ensembl C31C9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02296 Hypothetical protein C31C9.1a [Caenorhabditis elegans] emb|CAB05698.2| Hypothetical protein C31C9.1a [Caenorhabditis elegans] ref|NP_496867.2| Temporarily Assigned Gene name family member (tag-10) [Caenorhabditis elegans] 0.0
blast CAD57698 Hypothetical protein C31C9.1b [Caenorhabditis elegans] emb|CAD57688.1| Hypothetical protein C31C9.1b [Caenorhabditis elegans] ref|NP_871957.1| Temporarily Assigned Gene name family member (tag-10) [Caenorhabditis elegans] 0.0
blast CAE73251 Hypothetical protein CBG20667 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:191470_S_AT
ctcgttcgccatgcagagttacgacgggaagaagctggtttgggggtcgagtagaaatgg
tacgatgtatgagttgaacttgttcatcgccgattggatcgactatccgagtaatacaac
ggttgctccggctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGTTCGCCATGCAGAGTTACGAC 364 233 1143 Antisense
CGCCATGCAGAGTTACGACGGGAAG 173 255 1149 Antisense
TACGACGGGAAGAAGCTGGTTTGGG 573 645 1162 Antisense
GGAAGAAGCTGGTTTGGGGGTCGAG 398 525 1169 Antisense
GAAGCTGGTTTGGGGGTCGAGTAGA 386 341 1173 Antisense
GGGGGTCGAGTAGAAATGGTACGAT 396 375 1184 Antisense
GGTACGATGTATGAGTTGAACTTGT 164 503 1201 Antisense
TTGAACTTGTTCATCGCCGATTGGA 391 705 1216 Antisense
TTGTTCATCGCCGATTGGATCGACT 518 703 1222 Antisense
GGATCGACTATCCGAGTAATACAAC 504 509 1238 Antisense
GTAATACAACGGTTGCTCCGGCTGC 324 461 1253 Antisense
Sequence Source Affymetrix Proprietary Database