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[191469_at]

Description C31C9.1 /REP_DB=WormBase Gene ID /WP=CE08496 /TR=O01986 /GB=CAB02296.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=apical gut membrane protein
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 01      4grp_high_8_8 > 51      6grp_highest_nonorm > 20      6grp_total > 34      4grp_total > 52      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3851
1 2 3 4 range
A 2952.6
(3)
P 		2819.2
(2.7)
P 		2133.2
(1.2)
P 		166.4
(-3)
A 		2786
B 3296.2
(3)
P 		3285.2
(3)
P 		3064.3
(2.6)
P 		100.2
(-3)
P 		3196
C 3951.6
(3)
P 		3430.2
(2.2)
P 		2392.3
(0.6)
P 		126.3
(-3)
A 		3825
avr 3400.1
(3) 		3178.2
(2.6) 		2529.9
(1.4) 		131
(-3) 		3269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1864
1 2 3 4 5 6 range
A 1409.3
(3)
P 		1277.9
(2)
P 		1194.4
(1.4)
P 		839.3
(-1.3)
P 		617.9
(-3)
P 		633.6
(-2.9)
P 		791
B 1346.1
(1.9)
P 		1015.3
(0)
P 		1545.5
(3)
P 		895.2
(-0.6)
P 		591.7
(-2.3)
P 		468.2
(-3)
P 		1077
C 2331.8
(3)
P 		847.9
(-1.8)
P 		1346.2
(-0.2)
P 		760
(-2.1)
P 		683.4
(-2.4)
P 		488.9
(-3)
P 		1843
avr 1695.7
(3) 		1047
(-0.3) 		1362
(1.3) 		831.5
(-1.4) 		631
(-2.5) 		530.2
(-3) 		1166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1287
1 2 3 4 range
A 1075.1
(3)
P 		612
(0.4)
P 		557.7
(0)
P 		24.4
(-3)
A 		1051
B 1051.1
(3)
P 		811.4
(1.6)
P 		710.1
(1)
P 		21.4
(-3)
P 		1030
C 1308.1
(3)
P 		986.2
(1.5)
P 		833.8
(0.8)
P 		21.3
(-3)
A 		1287
avr 1144.8
(3) 		803.2
(1.2) 		700.5
(0.6) 		22.4
(-3) 		1122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 712
1 2 3 4 5 6 range
A 259.8
(-0.9)
P 		454.5
(3)
P 		260.1
(-0.9)
P 		212.9
(-1.8)
P 		186.4
(-2.4)
P 		154.3
(-3)
P 		300
B 468.4
(3)
P 		338
(0.3)
P 		375.3
(1.1)
P 		237.1
(-1.7)
P 		240.4
(-1.7)
P 		174.6
(-3)
P 		294
C 864.3
(3)
P 		258.7
(-2.1)
P 		342.6
(-1.4)
P 		152.8
(-3)
P 		221.1
(-2.4)
P 		163.6
(-2.9)
P 		712
avr 530.8
(3) 		350.4
(0) 		326
(-0.4) 		200.9
(-2.4) 		216
(-2.2) 		164.2
(-3) 		367
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191469_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3127
Sequence Type Exemplar sequence
Representative Public ID C31C9.1 NCBI
Target Description C31C9.1 /REP_DB=WormBase Gene ID /WP=CE08496 /TR=O01986 /GB=CAB02296.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=apical gut membrane protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064466(11), NM_182157(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064466 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-10) (tag-10) mRNA, complete cds. 11/11 A 
NM_182157 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-10) (tag-10) mRNA, complete cds. 11/11 A 
C31C9.1a ENSEMBL cdna:known chromosome:CEL140:II:13632551:13636878:1 gene:C31C9.1 11/11 A 
C31C9.1b ENSEMBL cdna:known chromosome:CEL140:II:13632558:13636857:1 gene:C31C9.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002042 3/11 Cross Hyb Matching Probes None
GENEFINDER00000002053 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13632554-13635663(+) 100.0 100.0
Public Domain and Genome References
Ensembl C31C9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02296 Hypothetical protein C31C9.1a [Caenorhabditis elegans] emb|CAB05698.2| Hypothetical protein C31C9.1a [Caenorhabditis elegans] ref|NP_496867.2| Temporarily Assigned Gene name family member (tag-10) [Caenorhabditis elegans] 0.0
blast CAD57698 Hypothetical protein C31C9.1b [Caenorhabditis elegans] emb|CAD57688.1| Hypothetical protein C31C9.1b [Caenorhabditis elegans] ref|NP_871957.1| Temporarily Assigned Gene name family member (tag-10) [Caenorhabditis elegans] 0.0
blast CAE73251 Hypothetical protein CBG20667 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:191469_AT
gaaccaaaatcgcattcacctctatccgatctggagacctcgagctctacataatggata
tcgatgggaagaacttgattcaaatcaccaatgaacttggctatgatggaggatccttct
tcactcctgatggaaaacggttgatcttccgtgccagccgtccaaagaatgaaactgaaa
tcgcaaagtataagaagcttctgtcgtacaatctagtggagccaattgccatggagctct
tcatagttgacatcgatggacagaacttacggaagatcacgaatctcggagaagccaact
gggctccgtatatgttgaatgacaataagcggatcattttcagcagtaactatgataccg
ctgcaaatggatttggagccttcagtttatacatggtgaacgacgacgggacaggccttc
agcaaatcacattcggacagaatcaattcaactcgttcgccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCAAAATCGCATTCACCTCTAT 315 345 692 Antisense
TTCACCTCTATCCGATCTGGAGACC 102 687 706 Antisense
TGGAGACCTCGAGCTCTACATAATG 463 547 723 Antisense
ATCCTTCTTCACTCCTGATGGAAAA 309 39 804 Antisense
GAAAACGGTTGATCTTCCGTGCCAG 336 353 824 Antisense
GAAGCTTCTGTCGTACAATCTAGTG 137 343 885 Antisense
AGCCAATTGCCATGGAGCTCTTCAT 300 85 911 Antisense
GGAGAAGCCAACTGGGCTCCGTATA 72 519 979 Antisense
TGGTGAACGACGACGGGACAGGCCT 251 541 1085 Antisense
GACAGGCCTTCAGCAAATCACATTC 232 369 1101 Antisense
AGAATCAATTCAACTCGTTCGCCAT 330 75 1130 Antisense
Sequence Source Affymetrix Proprietary Database