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[191466_at] UDP-glucuronosyltransferase

Description C35A5.2 /REP_DB=WormBase Gene ID /WP=CE05360 /TR=Q18470 /GB=CAA94904.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 93      6grp_total > 77      4grp_total > 02      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4883
1 2 3 4 range
A 281.8
(-2.9)
P 		242.1
(-3)
P 		267.4
(-3)
P 		4660.8
(3)
P 		4419
B 255.5
(-3)
P 		216.7
(-3)
P 		244.1
(-3)
P 		5099.4
(3)
P 		4883
C 266.8
(-2.9)
P 		323.8
(-2.9)
P 		230.6
(-3)
P 		4371.2
(3)
P 		4141
avr 268
(-3) 		260.9
(-3) 		247.4
(-3) 		4710.5
(3) 		4463

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 981
1 2 3 4 5 6 range
A 151.7
(-2.8)
P 		120.9
(-3)
P 		146.9
(-2.8)
P 		300.3
(-1.9)
P 		335.1
(-1.6)
P 		1065.4
(3)
P 		945
B 140.5
(-2.8)
P 		112.2
(-3)
P 		136.9
(-2.8)
P 		202.6
(-2.3)
P 		332.6
(-1.3)
P 		885.7
(3)
P 		774
C 201.9
(-2.2)
P 		84
(-3)
P 		118.9
(-2.8)
P 		307.3
(-1.5)
P 		326.3
(-1.3)
P 		955.2
(3)
P 		871
avr 164.7
(-2.6) 		105.7
(-3) 		134.2
(-2.8) 		270.1
(-1.9) 		331.3
(-1.4) 		968.8
(3) 		863
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1034
1 2 3 4 range
A 102.6
(-2.5)
P 		52.6
(-3)
P 		69.9
(-2.8)
P 		682.3
(3)
P 		630
B 81.5
(-2.8)
P 		53.5
(-3)
P 		56.6
(-3)
P 		1086.7
(3)
P 		1033
C 88.3
(-2.9)
P 		93.1
(-2.9)
P 		80.4
(-3)
P 		737.1
(3)
P 		657
avr 90.8
(-2.8) 		66.4
(-3) 		69
(-3) 		835.4
(3) 		769

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 28
(-3)
P 		43
(-2.6)
P 		32
(-2.9)
P 		76.2
(-1.8)
P 		101.1
(-1.1)
P 		259.4
(3)
P 		231
B 48.9
(-2.7)
P 		37.3
(-2.9)
P 		33.3
(-3)
P 		53.7
(-2.6)
P 		135.1
(-0.9)
P 		330.3
(3)
P 		297
C 74.8
(-2)
P 		25.6
(-3)
P 		30.3
(-2.9)
P 		61.8
(-2.3)
P 		105.6
(-1.4)
P 		319.8
(3)
P 		294
avr 50.6
(-2.6) 		35.3
(-2.9) 		31.9
(-3) 		63.9
(-2.3) 		113.9
(-1.2) 		303.2
(3) 		271
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191466_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12357
Sequence Type Exemplar sequence
Representative Public ID C35A5.2 NCBI
Target Description C35A5.2 /REP_DB=WormBase Gene ID /WP=CE05360 /TR=Q18470 /GB=CAA94904.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073291 NCBI Caenorhabditis elegans C35A5.2 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000025022 ENSEMBL cdna:SNAP chromosome:CEL140:V:10497654:10498987:1 11/11 None
GENEFINDER00000025045 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10495998:10499584:1 10/11 None
C35A5.2 ENSEMBL cdna:known chromosome:CEL140:V:10495991:10499048:1 gene:C35A5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10495997-10498987(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-33
Ensembl C35A5.2
Entrez Gene 179464 Entrez gene
SwissProt Q18470 EMBL-EBI
WormBase CE31329 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94904 Hypothetical protein C35A5.2 [Caenorhabditis elegans] ref|NP_505692.2| C35A5.2 [Caenorhabditis elegans] 0.0
blast CAE64804 Hypothetical protein CBG09597 [Caenorhabditis briggsae] 0.0
blast CAA98274 Hypothetical protein F29F11.2 [Caenorhabditis elegans] emb|CAA98112.2| Hypothetical protein F29F11.2 [Caenorhabditis elegans] ref|NP_505728.2| F29F11.2 [Caenorhabditis elegans] 1.0E-175
blast CAA98274 Hypothetical protein F29F11.2 [Caenorhabditis elegans] emb|CAA98112.2| Hypothetical protein F29F11.2 [Caenorhabditis elegans] ref|NP_505728.2| F29F11.2 [Caenorhabditis elegans] 1.0E-167
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.7E-25
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.3E-19
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.7E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505692.2 2 7-29,488-510
C35A5.2 2 7-29,488-510
SNAP00000025022 1 322-344
GENEFINDER00000025045 2 7-29,535-557
Sequence
Target Sequence 
>C. ELEGANS:191466_AT
agatgacgtcagttttgctaagcacttgccaaatcttcatttctcaaaatgggttccaca
aactgcgctgttagctgattcccgtctttctgcatttgttacacatgctggattaggaag
tgtgacagaattaagttacatgggaaaaccagcagttttaattcctctttttgctgatca
attgagaaattcaaaaacgttgtccaggcacaatggatcaataactttgagcaaatatga
tttgagcagttttgaaaagttaagattcgcaataaacaccattttaaacgatgaaaggta
taaaataaatgctgaaattctctcacaacaacttcaagatcaacctgtttccccacatgc
tctacttgtgaagcatgctgaatttggagcaaaatacggagagctgccaaaccttgatcc
atgctctcgtcagatgtcttttatttcattctatatgcttgatattatagtttttgttgg
tttcatattaatcacaaccaccatcgggatcgtattgacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGACGTCAGTTTTGCTAAGCAC 654 67 1167 Antisense
AGCACTTGCCAAATCTTCATTTCTC 373 77 1187 Antisense
AAACTGCGCTGTTAGCTGATTCCCG 430 127 1226 Antisense
CCGTCTTTCTGCATTTGTTACACAT 361 265 1248 Antisense
GTTTTAATTCCTCTTTTTGCTGATC 488 447 1321 Antisense
GCTGAAATTCTCTCACAACAACTTC 377 295 1477 Antisense
TTTCCCCACATGCTCTACTTGTGAA 673 669 1514 Antisense
TACGGAGAGCTGCCAAACCTTGATC 542 647 1561 Antisense
CCATGCTCTCGTCAGATGTCTTTTA 335 271 1585 Antisense
CATATTAATCACAACCACCATCGGG 563 213 1650 Antisense
ACCACCATCGGGATCGTATTGACAG 24 85 1663 Antisense
Sequence Source Affymetrix Proprietary Database