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[191465_at] Domain of unknown function

Description Y17D7A.2 /REP_DB=WormBase Gene ID /WP=CE21377 /TR=O45906 /GB=CAA16293.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Domain of unknown function
Cluster 6grp_high1_10_10 > 25      6grp_total > 35      4grp_total > 29      6grp_high1_sub > 01_02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 186.1
(1)
P 		141.4
(-0.8)
P 		84.6
(-3)
A 		236.2
(3)
P 		152
B 158.1
(1.1)
P 		141.6
(0.1)
P 		87
(-3)
A 		191.2
(3)
P 		104
C 212.2
(3)
P 		131.2
(-1.1)
P 		93.7
(-3)
A 		141.7
(-0.6)
P 		119
avr 185.5
(2.8) 		138.1
(-0.1) 		88.4
(-3) 		189.7
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 90.9
(0.7)
P 		89.3
(0.5)
P 		109.4
(3)
M 		105.7
(2.5)
P 		60.3
(-3)
P 		101.6
(2)
P 		49
B 101.4
(1.5)
P 		115.3
(3)
P 		89.9
(0.2)
P 		69.5
(-2)
P 		81.1
(-0.7)
P 		60.2
(-3)
P 		55
C 93.6
(3)
P 		76.4
(-1)
P 		67.4
(-3)
P 		88.6
(1.8)
P 		85.3
(1.1)
P 		93.8
(3)
P 		26
avr 95.3
(3) 		93.7
(2.5) 		88.9
(1.1) 		87.9
(0.7) 		75.6
(-3) 		85.2
(-0.1) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 67.8
(3)
P 		30.7
(-1.9)
P 		22.1
(-3)
A 		34.6
(-1.4)
P 		46
B 50.4
(3)
P 		35
(-0.1)
P 		20.2
(-3)
A 		40.8
(1.1)
P 		30
C 70.2
(3)
P 		37.7
(-1.2)
P 		32.7
(-1.9)
A 		23.9
(-3)
P 		46
avr 62.8
(3) 		34.5
(-1.5) 		25
(-3) 		33.1
(-1.7) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 16.8
(-3)
P 		31.8
(3)
P 		23.8
(-0.2)
M 		26.8
(1)
P 		18.2
(-2.4)
P 		24.7
(0.2)
P 		15
B 35.3
(2.1)
P 		38.4
(3)
P 		21.8
(-2)
P 		18.4
(-3)
P 		33
(1.4)
P 		22.4
(-1.8)
P 		20
C 34.7
(3)
P 		23.3
(-0.9)
P 		17.1
(-3)
P 		17.8
(-2.8)
P 		27.6
(0.6)
P 		31.4
(1.9)
P 		18
avr 28.9
(1.7) 		31.2
(3) 		20.9
(-3) 		21
(-2.9) 		26.3
(0.1) 		26.2
(0.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13609
Sequence Type Exemplar sequence
Representative Public ID Y17D7A.2 NCBI
Target Description Y17D7A.2 /REP_DB=WormBase Gene ID /WP=CE21377 /TR=O45906 /GB=CAA16293.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Domain of unknown function
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075281(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075281 NCBI Caenorhabditis elegans Y17D7A.2 (Y17D7A.2) mRNA, complete cds. 11/11 None
Y17D7A.2 ENSEMBL cdna:known chromosome:CEL140:V:18852052:18855236:1 gene:Y17D7A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005606 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18852051-18855236(+) 99.88 100.0
Public Domain and Genome References
Gene Title Domain of unknown function
Ensembl Y17D7A.2
Entrez Gene 189443 Entrez gene
SwissProt O45906 EMBL-EBI
WormBase CE21377 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16293 Hypothetical protein Y17D7A.2 [Caenorhabditis elegans] ref|NP_507682.1| Y17D7A.2 [Caenorhabditis elegans] 1.0E-159
blast CAE56186 Hypothetical protein CBG23808 [Caenorhabditis briggsae] 1.0E-121
blast CAE17952 Hypothetical protein Y17D7A.3b [Caenorhabditis elegans] ref|NP_001024220.1| Nuclear Hormone Receptor family member (nhr-65) [Caenorhabditis elegans] 2.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.0073
Sequence
Target Sequence 
>C. ELEGANS:191465_AT
gctacacgatggttcacttattttgatgaatttcaagatttggatcaggaacagaagcta
gaactgattcaagctatttggcacgtgtggtcccgtctctacaagctttccacgtcagca
attggaaaacgccggcagatttgtgaggataaaatgctaatgataagccatggctccgag
tatactgtaatggatctcacgaaaattgaatttgatttttcatggtgcacaaaatatact
aatgagcaaatgcaacacttcatcgacaacacgcaaaatagttttctgtataaactggtg
gactatatgatggacctgaagcccagtgacgtggaactatccttcatgatctgccaggcg
tgcttccactacgcgggacaacgatttcatggaaaaatgctggaaatttgtgaaaatttt
cagcaaaaattggccgatgagcttcacgaattttatgtggacgagtggagaatgcccaat
tactctgggaggttgtcacagctattaaggattaataatcgcattcgggaagacatctgg
aaatgccgtaaaaaacaagaaattgccgagattttcgacgtctacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTACACGATGGTTCACTTATTTTG 211 303 199 Antisense
GATTCAAGCTATTTGGCACGTGTGG 398 431 264 Antisense
TCTCTACAAGCTTTCCACGTCAGCA 291 613 294 Antisense
GGAAAACGCCGGCAGATTTGTGAGG 582 525 322 Antisense
AAGCCATGGCTCCGAGTATACTGTA 143 147 363 Antisense
GCAACACTTCATCGACAACACGCAA 154 319 450 Antisense
AGCCCAGTGACGTGGAACTATCCTT 597 81 518 Antisense
AACTATCCTTCATGATCTGCCAGGC 405 139 533 Antisense
CCACTACGCGGGACAACGATTTCAT 612 273 564 Antisense
TACTCTGGGAGGTTGTCACAGCTAT 79 647 679 Antisense
TTGCCGAGATTTTCGACGTCTACAG 696 701 761 Antisense
Sequence Source Affymetrix Proprietary Database