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[191464_s_at] Histone deacetylase family

Description Y51H1A.5 /REP_DB=WormBase Gene ID /WP=CE24411 /TR=Q9U266 /GB=CAA21669.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Histone deacetylase family
Cluster 6grp_high1_10_10 > 79      4grp_high_8_8 > 11      6grp_total > 89      4grp_total > 10      6grp_cgc > 79      6grp_high1_sub > Cu      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 57.6
(-2.2)
A 		49
(-3)
P 		57
(-2.3)
A 		116.4
(3)
P 		67
B 42.5
(-3)
M 		66.6
(1.9)
P 		56.6
(-0.1)
P 		72
(3)
P 		30
C 82.2
(0)
P 		70.8
(-1.6)
P 		60.8
(-3)
P 		103
(3)
P 		42
avr 60.8
(-2.6) 		62.1
(-2.4) 		58.1
(-3) 		97.1
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 52.5
(-1.8)
P 		68.3
(-0.6)
A 		38.1
(-3)
A 		40.5
(-2.8)
P 		107.6
(2.6)
P 		112.1
(3)
P 		74
B 49.6
(-3)
P 		80.9
(0.7)
P 		70.4
(-0.6)
P 		56.6
(-2.2)
A 		66.2
(-1.1)
P 		100.9
(3)
P 		51
C 46.6
(-1)
A 		60.6
(0.2)
P 		22.6
(-3)
A 		37.9
(-1.7)
A 		94.1
(3)
P 		91.5
(2.8)
P 		72
avr 49.6
(-2.4) 		69.9
(-0.3) 		43.7
(-3) 		45
(-2.9) 		89.3
(1.7) 		101.5
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 21
(3)
A 		10.6
(-3)
P 		14.9
(-0.5)
A 		17
(0.7)
P 		10
B 13.6
(-2.1)
M 		16.4
(3)
P 		13.1
(-3)
P 		15.3
(1)
P 		3
C 27.2
(3)
P 		20.4
(-1.2)
P 		21.2
(-0.7)
P 		17.4
(-3)
P 		10
avr 20.6
(3) 		15.8
(-3) 		16.4
(-2.3) 		16.6
(-2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 9.7
(-2.7)
P 		24.3
(1)
A 		8.3
(-3)
A 		10.3
(-2.5)
P 		32.5
(3)
P 		27.3
(1.7)
P 		24
B 17.3
(-2.4)
P 		26.9
(0.2)
P 		17.1
(-2.4)
P 		15
(-3)
A 		26.9
(0.2)
P 		37.6
(3)
P 		23
C 17.3
(-0.2)
A 		18.5
(0.1)
P 		5.7
(-3)
A 		7.6
(-2.5)
A 		30.4
(3)
P 		30.6
(3)
P 		25
avr 14.8
(-1.8) 		23.2
(0.6) 		10.4
(-3) 		11
(-2.8) 		29.9
(2.5) 		31.8
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191464_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3676
Sequence Type Exemplar sequence
Representative Public ID Y51H1A.5 NCBI
Target Description Y51H1A.5 /REP_DB=WormBase Gene ID /WP=CE24411 /TR=Q9U266 /GB=CAA21669.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Histone deacetylase family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064509(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064509 NCBI Caenorhabditis elegans Histone DeAcetylase family member (hda-6) (hda-6) mRNA, complete cds. 11/11 A 
GENEFINDER00000044422 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13882607:13889467:1 10/11 None
Y51H1A.5.2 ENSEMBL cdna:known chromosome:CEL140:II:13882598:13887915:1 gene:Y51H1A.5 11/11 A 
Y51H1A.5.1 ENSEMBL cdna:known chromosome:CEL140:II:13882599:13887915:1 gene:Y51H1A.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044416 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13882603-13887836(+) 100.0 100.0
Public Domain and Genome References
Gene Title Histone deacetylase family
Gene Symbol hda-6
Ensembl Y51H1A.5
Entrez Gene 175039 Entrez gene
SwissProt Q9U266 EMBL-EBI
WormBase CE24411 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16575 histone deacetylation inferred from sequence similarity QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4407 histone deacetylase activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21669 Hypothetical protein Y51H1A.5 [Caenorhabditis elegans] ref|NP_496910.1| Histone DeAcetylase family member (hda-6) [Caenorhabditis elegans] 0.0
blast CAE73261 Hypothetical protein CBG20677 [Caenorhabditis briggsae] 0.0
blast CAE73261 Hypothetical protein CBG20677 [Caenorhabditis briggsae] 1.0E-169
blast AAH44446 Unknown (protein for MGC:55652) [Danio rerio] ref|NP_956069.1| hypothetical protein LOC327253 [Danio rerio] 1.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR000286 EMBL-EBI Histone deacetylase superfamily 9.5E-85
Sequence
Target Sequence 
>C. ELEGANS:191464_S_AT
tttatactccgttcacagagcagaaggtggcggaatttaaagatcaactcgaatcgatac
tcgccagctacacaacccctcccgacttttccgcggaaactgaagcattccacagtgcca
tagcccctcacagctcagaaatcaacgatttctactttggagtccacgaggacaagatcc
tgctcggcacgagcccagcggttcggcttttcttcgaacttctcttcaccgcaccctacg
acccgaagcacacgataaagctgtacggaaaggtgaagccggaggattttggcaaaattg
agttggattccagaagtcttggggagatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTATACTCCGTTCACAGAGCAGAA 138 675 1193 Antisense
GAGCAGAAGGTGGCGGAATTTAAAG 523 385 1210 Antisense
ATTTCTACTTTGGAGTCCACGAGGA 83 17 1340 Antisense
CGAGGACAAGATCCTGCTCGGCACG 35 251 1359 Antisense
CAGCGGTTCGGCTTTTCTTCGAACT 14 203 1388 Antisense
GTTCGGCTTTTCTTCGAACTTCTCT 349 441 1393 Antisense
CCTACGACCCGAAGCACACGATAAA 329 269 1427 Antisense
GAAGCACACGATAAAGCTGTACGGA 466 341 1437 Antisense
GCTGTACGGAAAGGTGAAGCCGGAG 543 293 1452 Antisense
AATTGAGTTGGATTCCAGAAGTCTT 115 179 1488 Antisense
ATTCCAGAAGTCTTGGGGAGATGAA 653 5 1499 Antisense
Sequence Source Affymetrix Proprietary Database