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[191462_at] Serine carboxypeptidase

Description F41C3.5 /REP_DB=WormBase Gene ID /WP=CE02733 /TR=SW:P52717 /GB=AAC46812.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Serine carboxypeptidase
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 11      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 06      6grp_total > 22      4grp_total > 58      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13684
1 2 3 4 range
A 10678.5
(-0.2)
P 		14630.9
(1.6)
P 		17728.4
(3)
P 		4533.2
(-3)
P 		13195
B 10674.1
(-0.1)
P 		14974.1
(1.8)
P 		17612.6
(3)
P 		4171.2
(-3)
P 		13441
C 10511.8
(0.2)
P 		14618.7
(2.2)
P 		16142.8
(3)
P 		4044.9
(-3)
P 		12098
avr 10621.5
(-0) 		14741.2
(1.9) 		17161.3
(3) 		4249.8
(-3) 		12912

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9676
1 2 3 4 5 6 range
A 14008.8
(3)
P 		10506.2
(0.8)
P 		11370.5
(1.4)
P 		10650
(0.9)
P 		8381.6
(-0.5)
P 		4333
(-3)
P 		9676
B 12005.9
(3)
P 		10942
(2.1)
P 		10601.8
(1.8)
P 		10620.9
(1.8)
P 		8457.9
(0)
P 		4875.1
(-3)
P 		7131
C 9570.7
(1.3)
P 		11366.7
(3)
P 		10429.5
(2.1)
P 		10938
(2.6)
P 		7005.6
(-1)
P 		4851
(-3)
P 		6516
avr 11861.8
(3) 		10938.3
(2.2) 		10800.6
(2.1) 		10736.3
(2.1) 		7948.4
(-0.3) 		4686.4
(-3) 		7175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4963
1 2 3 4 range
A 3888.1
(1.9)
P 		3176
(0.8)
P 		4634.6
(3)
P 		663.6
(-3)
P 		3971
B 3403.9
(1.7)
P 		3698.3
(2.3)
P 		4081.3
(3)
P 		888.9
(-3)
P 		3192
C 3479.7
(0.4)
P 		4203
(1.3)
P 		5626.3
(3)
P 		682
(-3)
P 		4944
avr 3590.6
(1.2) 		3692.4
(1.4) 		4780.7
(3) 		744.8
(-3) 		4036

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3123
1 2 3 4 5 6 range
A 2582.4
(0.4)
P 		3736.5
(3)
P 		2476.3
(0.2)
P 		2701.1
(0.7)
P 		2529.2
(0.3)
P 		1055
(-3)
P 		2682
B 4177.5
(3)
P 		3642.1
(1.6)
P 		2574.4
(-1.1)
P 		2813.1
(-0.5)
P 		3436.4
(1.1)
P 		1817.9
(-3)
P 		2360
C 3547.5
(3)
P 		3468.3
(2.8)
P 		2654.5
(0.2)
P 		2199.6
(-1.2)
P 		2266.9
(-1)
P 		1623.9
(-3)
P 		1924
avr 3435.8
(2.5) 		3615.6
(3) 		2568.4
(0) 		2571.3
(0) 		2744.2
(0.5) 		1498.9
(-3) 		2117
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191462_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4412
Sequence Type Exemplar sequence
Representative Public ID F41C3.5 NCBI
Target Description F41C3.5 /REP_DB=WormBase Gene ID /WP=CE02733 /TR=SW:P52717 /GB=AAC46812.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Serine carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062445(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062445 NCBI Caenorhabditis elegans F41C3.5 (F41C3.5) mRNA, complete cds. 11/11 None
SNAP00000035620 ENSEMBL cdna:SNAP chromosome:CEL140:II:4737636:4739698:1 11/11 None
GENEFINDER00000035630 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4737636:4739698:1 11/11 None
F41C3.5.2 ENSEMBL cdna:known chromosome:CEL140:II:4737604:4739892:1 gene:F41C3.5 11/11 None
F41C3.5.1 ENSEMBL cdna:known chromosome:CEL140:II:4737634:4739892:1 gene:F41C3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4737634-4739697(+) 100.0 100.0
Public Domain and Genome References
Gene Title Serine carboxypeptidase
Ensembl F41C3.5
Entrez Gene 173818 Entrez gene
SwissProt P52717 EMBL-EBI
WormBase CE02733 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257934_AT serine carboxypeptidase S10 family protein at
CANINE_2:CFA.20724.1.S1_AT similar to Lysosomal protective protein precursor (Cathepsin A) (Carboxypeptidase C) (Protective protein for beta-galactosidase) cfa
CANINE_2:CFAAFFX.15405.1.S1_AT similar to Lysosomal protective protein precursor (Cathepsin A) (Carboxypeptidase C) (Protective protein for beta-galactosidase) cfa
CANINE_2:CFAAFFX.15405.1.S1_S_AT similar to Lysosomal protective protein precursor (Cathepsin A) (Carboxypeptidase C) (Protective protein for beta-galactosidase) cfa
CHICKEN:GGAAFFX.12892.1.S1_AT protective protein for beta-galactosidase (galactosialidosis) gga
HG-U95AV2:39062_AT protective protein for beta-galactosidase (galactosialidosis) hs
HG-U133_PLUS_2:200661_AT protective protein for beta-galactosidase (galactosialidosis) hs
HG-FOCUS:200661_AT protective protein for beta-galactosidase (galactosialidosis) hs
HG-U133A:200661_AT protective protein for beta-galactosidase (galactosialidosis) hs
HG-U133A_2:200661_AT protective protein for beta-galactosidase (galactosialidosis) hs
HUGENEFL:M22960_AT protective protein for beta-galactosidase (galactosialidosis) hs
U133_X3P:G4505988_3P_S_AT protective protein for beta-galactosidase (galactosialidosis) hs
U133_X3P:G4505988_3P_AT protective protein for beta-galactosidase (galactosialidosis) hs
U133_X3P:200661_3P_AT protective protein for beta-galactosidase (galactosialidosis) hs
MOUSE430_2:1448128_AT protective protein for beta-galactosidase mm
MOUSE430A_2:1448128_AT protective protein for beta-galactosidase mm
MOE430A:1448128_AT protective protein for beta-galactosidase mm
MU11KSUBA:J05261_F_AT protective protein for beta-galactosidase mm
MU11KSUBB:MSA.1108.0_F_AT protective protein for beta-galactosidase mm
MG-U74AV2:101055_AT protective protein for beta-galactosidase mm
MOE430B:1458466_AT protective protein for beta-galactosidase mm
MOUSE430_2:1458466_AT protective protein for beta-galactosidase mm
MU11KSUBB:MSA.21335.0_AT Protective protein for beta-galactosidase, mRNA (cDNA clone MGC:6527 IMAGE:2651479) mm
MU19KSUBB:TC27416_AT Protective protein for beta-galactosidase, mRNA (cDNA clone MGC:6527 IMAGE:2651479) mm
MU19KSUBB:TC27417_F_AT Protective protein for beta-galactosidase, mRNA (cDNA clone MGC:6527 IMAGE:2651479) mm
MU19KSUBB:TC27418_AT Protective protein for beta-galactosidase, mRNA (cDNA clone MGC:6527 IMAGE:2651479) mm
MU19KSUBC:TC38021_S_AT Protective protein for beta-galactosidase, mRNA (cDNA clone MGC:6527 IMAGE:2651479) mm
RG-U34C:RC_AI175515_AT protective protein for beta-galactosidase (predicted) rn
RAE230A:1371325_AT protective protein for beta-galactosidase (predicted) rn
RAT230_2:1371325_AT protective protein for beta-galactosidase (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4185 serine carboxypeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46812 Hypothetical protein F41C3.5 [Caenorhabditis elegans] ref|NP_494846.1| F41C3.5 [Caenorhabditis elegans] sp|P52717|YUW5_CAEEL Putative serine carboxypeptidase F41C3.5 precursor 0.0
blast CAE60636 Hypothetical protein CBG04280 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.6E-55
Sequence
Target Sequence 
>C. ELEGANS:191462_AT
aatggcccattttgatgagctcttgaaaaatcaaacaaagacttccctttatcaattttt
gaaaaacaaatctcaatcccaaaagccacttaaggctgatgttccatgcctcaacgatac
tgagatgctctcctatatgaacaatccaaaggttcgtaaggcaatccacattccattcaa
tcttggaaaatgggatatctgcagtgacaaggtgactactacctaccagaagcagtacac
cgatatgactccattcatcaagaagatcgtcaagaaccacgtcagagttcttttgtacta
tggagatactgatatggcctgcaactttatgatgggacagcaattctctgatcaacttgg
acttcgtagaacacttaaaaagactccatggaagtatgatagacaaatcgccggattcaa
gacacttttcgatgggctcagtttcatcactattcgcggagctggacatatggctccaca
atggagagctccacaaatgtactacgccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGCCCATTTTGATGAGCTCTTG 114 163 882 Antisense
AAATCTCAATCCCAAAAGCCACTTA 306 117 949 Antisense
TAAGGCTGATGTTCCATGCCTCAAC 391 637 972 Antisense
GTAAGGCAATCCACATTCCATTCAA 95 463 1037 Antisense
GTGACTACTACCTACCAGAAGCAGT 379 483 1093 Antisense
GCAGTACACCGATATGACTCCATTC 467 311 1113 Antisense
GAGATACTGATATGGCCTGCAACTT 354 397 1184 Antisense
GGACAGCAATTCTCTGATCAACTTG 522 525 1216 Antisense
GACACTTTTCGATGGGCTCAGTTTC 549 365 1302 Antisense
TTTCATCACTATTCGCGGAGCTGGA 220 671 1323 Antisense
AGCTCCACAAATGTACTACGCCGTT 633 67 1368 Antisense
Sequence Source Affymetrix Proprietary Database