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[191460_at] 7TM chemoreceptor, str family

Description Y73C8A.1 /REP_DB=WormBase Gene ID /WP=CE20356 /GEN=str-16 /TR=Q9TXW0 /GB=AAC69234.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 38      4grp_total > 11      6grp_cgc > 07      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 27.4
(-1.7)
A 		57.6
(0.4)
A 		9.1
(-3)
A 		95.8
(3)
P 		87
B 27
(-1.7)
A 		16.1
(-2.4)
A 		6.1
(-3)
A 		105.3
(3)
P 		99
C 7
(-3)
A 		22.4
(-1.7)
A 		19.6
(-2)
A 		79.8
(3)
P 		73
avr 20.5
(-2.3) 		32
(-1.5) 		11.6
(-3) 		93.6
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 57
(3)
A 		6.8
(-2.6)
A 		3.3
(-3)
A 		8.1
(-2.5)
A 		23.6
(-0.7)
A 		9.9
(-2.3)
A 		54
B 39.9
(3)
A 		27.3
(0.9)
A 		23.8
(0.3)
A 		3.8
(-3)
A 		15.2
(-1.1)
A 		30.2
(1.4)
A 		36
C 4.8
(-2.8)
A 		3.9
(-3)
A 		4.2
(-2.9)
A 		4.7
(-2.9)
A 		10.3
(-1.9)
A 		39.3
(3)
A 		35
avr 33.9
(3) 		12.7
(-1.5) 		10.4
(-2) 		5.5
(-3) 		16.4
(-0.7) 		26.5
(1.4) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 10
(0.9)
A 		12.5
(2.2)
A 		2.4
(-3)
A 		14
(3)
P 		12
B 8.6
(-0.9)
A 		4
(-2.3)
A 		1.4
(-3)
A 		22.4
(3)
P 		21
C 2.3
(-3)
A 		6.4
(-0.8)
A 		6.8
(-0.6)
A 		13.5
(3)
P 		11
avr 7
(-1.4) 		7.6
(-1.1) 		3.5
(-3) 		16.6
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.5
(3)
A 		2.4
(-2)
A 		0.7
(-3)
A 		2.1
(-2.1)
A 		7.1
(0.9)
A 		2.4
(-2)
A 		10
B 13.9
(3)
A 		9.1
(0.8)
A 		5.8
(-0.8)
A 		1
(-3)
A 		6.2
(-0.6)
A 		11.3
(1.8)
A 		13
C 1.8
(-2.6)
A 		1.2
(-2.9)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		3.3
(-1.8)
A 		13.2
(3)
A 		12
avr 8.7
(2.8) 		4.2
(-0.7) 		2.5
(-2.1) 		1.3
(-3) 		5.5
(0.3) 		9
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191460_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15705
Sequence Type Exemplar sequence
Representative Public ID Y73C8A.1 NCBI
Target Description Y73C8A.1 /REP_DB=WormBase Gene ID /WP=CE20356 /GEN=str-16 /TR=Q9TXW0 /GB=AAC69234.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071486(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071486 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-16) (str-16) mRNA, complete cds. 11/11 None
SNAP00000014121 ENSEMBL cdna:SNAP chromosome:CEL140:V:3238922:3240329:1 10/11 None
Y73C8A.1 ENSEMBL cdna:known chromosome:CEL140:V:3238922:3240263:1 gene:Y73C8A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3238921-3240263(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-16
Ensembl Y73C8A.1
Entrez Gene 191969 Entrez gene
SwissProt Q9TXW0 EMBL-EBI
WormBase CE20356 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69234 Seven tm receptor protein 16 [Caenorhabditis elegans] ref|NP_503887.1| Seven TM Receptor family member (str-16) [Caenorhabditis elegans] 0.0
blast CAB04817 Hypothetical protein T23D5.6 [Caenorhabditis elegans] ref|NP_506919.1| Seven TM Receptor family member (str-18) [Caenorhabditis elegans] 1.0E-136
blast CAB04818 Hypothetical protein T23D5.7 [Caenorhabditis elegans] ref|NP_506920.2| Seven TM Receptor family member (str-19) [Caenorhabditis elegans] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.2E-7
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.2E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503887.1 7 10-32,44-66,91-113,134-156,206-228,249-271,286-308
Y73C8A.1 7 10-32,44-66,91-113,134-156,206-228,249-271,286-308
SNAP00000014121 7 10-32,44-66,91-113,134-156,206-228,249-271,286-308
Sequence
Target Sequence 
>C. ELEGANS:191460_AT
gtctacgctggatggttcggatgtcagtatgcgattgggtttctggtgttcaacgcggtg
gatgagtactcggaagagtacatgcgacaagaaatgcatgacgtgtacgggctcaatgta
gcggaagttccatgtgtgattcatgtgatccatcaatccattcccaactcaacccattcc
gttattcgctggcgaaacgtcttttgcacattcaacgtcacattcataatggttgttcag
tacggaattatgatattctgtggatatcagctgtataacgagatggaggagaaactgagc
atgctgtcaaaacagatgagaagacttcatcgacaaatattcaagactctcatgttacag
ataaccacgccaacaattgtcctgttctctcccatcgtttttgtgatctaccttccgtgg
ctcgatttggagctcagtgttcccacaggagtcttcttgtctggattcacattgtatcca
gcgcttgatgcattcatcctgatgtacgtcgtcacagactatcggcgagcgttcaaaact
gcgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTACGCTGGATGGTTCGGATGTC 436 469 421 Antisense
CTGGCGAAACGTCTTTTGCACATTC 703 241 609 Antisense
TTGCACATTCAACGTCACATTCATA 604 703 624 Antisense
AACCACGCCAACAATTGTCCTGTTC 673 147 783 Antisense
CTCTCCCATCGTTTTTGTGATCTAC 319 231 807 Antisense
CGATTTGGAGCTCAGTGTTCCCACA 131 249 843 Antisense
TGTTCCCACAGGAGTCTTCTTGTCT 165 563 858 Antisense
TTGTATCCAGCGCTTGATGCATTCA 353 707 892 Antisense
ATTCATCCTGATGTACGTCGTCACA 688 11 912 Antisense
CGTCGTCACAGACTATCGGCGAGCG 236 245 927 Antisense
TCGGCGAGCGTTCAAAACTGCGTTC 169 605 942 Antisense
Sequence Source Affymetrix Proprietary Database