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[191459_s_at] Zinc-binding dehydrogenases

Description F39B2.3 /REP_DB=WormBase Gene ID /WP=CE16009 /TR=O45496 /GB=CAB07384.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc-binding dehydrogenases
Cluster 6grp_high1_10_10 > 74      4grp_high_8_8 > 02      6grp_total > 75      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 295.4
(0.9)
P 		253.3
(-3)
P 		303.1
(1.6)
P 		318.5
(3)
P 		65
B 321.2
(1)
P 		197.2
(-3)
P 		270.4
(-0.6)
P 		382.3
(3)
P 		185
C 308.4
(1)
P 		262.3
(-1.5)
M 		235.7
(-3)
P 		343.9
(3)
P 		108
avr 308.3
(0.8) 		237.6
(-3) 		269.7
(-1.3) 		348.2
(3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 259.5
(-1.7)
P 		226.1
(-3)
P 		316.7
(0.6)
P 		378.5
(3)
P 		353.5
(2)
P 		313.1
(0.4)
P 		152
B 311.5
(-1.1)
P 		263.3
(-3)
P 		417.1
(3)
P 		368.6
(1.1)
P 		295.4
(-1.7)
P 		340.6
(0)
P 		154
C 269.2
(-1.7)
A 		292.9
(-0.9)
P 		312.1
(-0.2)
P 		335.2
(0.6)
P 		231.6
(-3)
P 		404.3
(3)
P 		173
avr 280.1
(-1.8) 		260.8
(-3) 		348.6
(2.3) 		360.8
(3) 		293.5
(-1) 		352.7
(2.5) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 107.6
(3)
P 		55
(-2.2)
P 		79.2
(0.2)
P 		46.6
(-3)
P 		61
B 102.4
(3)
P 		48.7
(-3)
P 		62.7
(-1.4)
P 		81.5
(0.7)
P 		54
C 102.1
(3)
P 		75.4
(-0.6)
M 		82.2
(0.3)
P 		58
(-3)
P 		44
avr 104
(3) 		59.7
(-3) 		74.7
(-1) 		62
(-2.7) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 47.8
(-3)
P 		80.4
(0.3)
P 		69
(-0.8)
P 		96
(1.9)
P 		106.7
(3)
P 		76.2
(-0.1)
P 		59
B 108.4
(0.2)
P 		87.7
(-3)
P 		101.3
(-0.9)
P 		97.6
(-1.5)
P 		120
(1.9)
P 		127
(3)
P 		39
C 99.8
(-0.1)
A 		89.4
(-1.1)
P 		79.4
(-1.9)
P 		67.4
(-3)
P 		74.9
(-2.3)
P 		135.3
(3)
P 		68
avr 85.3
(-2.6) 		85.8
(-2.5) 		83.2
(-3) 		87
(-2.2) 		100.5
(0.5) 		112.8
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191459_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1901
Sequence Type Exemplar sequence
Representative Public ID F39B2.3 NCBI
Target Description F39B2.3 /REP_DB=WormBase Gene ID /WP=CE16009 /TR=O45496 /GB=CAB07384.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc-binding dehydrogenases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061176(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061176 NCBI Caenorhabditis elegans F39B2.3 (F39B2.3) mRNA, complete cds. 11/11 None
SNAP00000018505 ENSEMBL cdna:SNAP chromosome:CEL140:I:14796336:14797573:-1 11/11 None
GENEFINDER00000018508 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14796336:14797600:-1 11/11 None
F39B2.3 ENSEMBL cdna:known chromosome:CEL140:I:14796306:14797600:-1 gene:F39B2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14796266-14797531(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc-binding dehydrogenases
Ensembl F39B2.3
Entrez Gene 173346 Entrez gene
SwissProt O45496 EMBL-EBI
WormBase CE16009 Wormbase
Functional Annotations
Ortholog
ID Title Organism
HG-U133_PLUS_2:202950_AT crystallin, zeta (quinone reductase) hs
HG-U133A:202950_AT crystallin, zeta (quinone reductase) hs
HG-FOCUS:202950_AT crystallin, zeta (quinone reductase) hs
HG-U133A_2:202950_AT crystallin, zeta (quinone reductase) hs
HUGENEFL:L13278_AT crystallin, zeta (quinone reductase) hs
U133_X3P:G4503066_3P_AT crystallin, zeta (quinone reductase) hs
HG-U95AV2:37902_AT crystallin, zeta (quinone reductase) hs
HU35KSUBD:RC_R40946_F_AT Crystallin, zeta (quinone reductase) hs
HG-U95D:76692_AT Crystallin, zeta (quinone reductase) hs
MOUSE430_2:1451848_A_AT crystallin, zeta mm
MOUSE430A_2:1451848_A_AT crystallin, zeta mm
MOE430A:1451848_A_AT crystallin, zeta mm
MU11KSUBA:S70056_S_AT crystallin, zeta mm
MG-U74AV2:98131_AT crystallin, zeta mm
MOUSE430A_2:1438610_A_AT Crystallin, zeta, mRNA (cDNA clone MGC:6074 IMAGE:3492859) mm
MOE430A:1438610_A_AT Crystallin, zeta, mRNA (cDNA clone MGC:6074 IMAGE:3492859) mm
MOUSE430_2:1438610_A_AT Crystallin, zeta, mRNA (cDNA clone MGC:6074 IMAGE:3492859) mm
RG-U34B:RC_AI059338_AT crystallin, zeta (predicted) rn
RG-U34C:RC_AI232098_AT crystallin, zeta (predicted) rn
RAE230A:1374628_AT crystallin, zeta (predicted) rn
RAT230_2:1374628_AT crystallin, zeta (predicted) rn
RAE230B:1380393_AT crystallin, zeta (predicted) rn
RAT230_2:1380393_AT crystallin, zeta (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4024 alcohol dehydrogenase activity, zinc-dependent inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07384 Hypothetical protein F39B2.3 [Caenorhabditis elegans] ref|NP_493577.1| F39B2.3 [Caenorhabditis elegans] 0.0
blast CAB07384 Hypothetical protein F39B2.3 [Caenorhabditis elegans] ref|NP_493577.1| F39B2.3 [Caenorhabditis elegans] 1.0E-180
blast CAE72529 Hypothetical protein CBG19709 [Caenorhabditis briggsae] 1.0E-143
blast CAE72529 Hypothetical protein CBG19709 [Caenorhabditis briggsae] 1.0E-142
blast XP_701943 PREDICTED: hypothetical protein XP_696851 [Danio rerio] 2.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 6.3E-68
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 6.3E-68
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 6.2E-68
Sequence
Target Sequence 
>C. ELEGANS:191459_S_AT
ctctcggagtgccttatcttaccgcttatcgtgcattgtttcatcttgctggtgcaaaga
ctggcgacgttatacttgtacacggagcatctggtggagtgggaagtgcactgatgcagc
tggctgcctggaggaacattgaagctgttggcactgctggatctgctgatgggatccggt
tcgtgaagagtcttggtgcacggaatgtctataatcattcggataagcaatatgtgtcga
aaatgaaaaatgattatccaggaggcttcaaccacattttcgaaatggctgctcacacaa
atctgaacacggacctcggattgctggctccacgtggtagagttgcagtaattggaaatc
gcgccgagaccacgatcaacgcaagacaacttatggttacagaaggagctgtttacggtg
tagcattgggaatgtcttccgaggctgagctcttggact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCGGAGTGCCTTATCTTACCGC 706 229 389 Antisense
ATCTTACCGCTTATCGTGCATTGTT 55 31 404 Antisense
GCATTGTTTCATCTTGCTGGTGCAA 197 307 421 Antisense
GACTGGCGACGTTATACTTGTACAC 156 377 447 Antisense
AGTGCACTGATGCAGCTGGCTGCCT 632 59 493 Antisense
TGAAGCTGTTGGCACTGCTGGATCT 1 575 528 Antisense
GAGTCTTGGTGCACGGAATGTCTAT 150 401 576 Antisense
CCAGGAGGCTTCAACCACATTTTCG 612 271 646 Antisense
TCTGAACACGGACCTCGGATTGCTG 265 599 690 Antisense
ATTGCTGGCTCCACGTGGTAGAGTT 165 5 708 Antisense
TCTTCCGAGGCTGAGCTCTTGGACT 60 619 823 Antisense
Sequence Source Affymetrix Proprietary Database