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[191457_at] 7TM chemoreceptor, srh family

Description F14F9.1 /REP_DB=WormBase Gene ID /WP=CE24900 /GEN=srh-130 /TR=Q9GUC3 /GB=AAF98620.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 40      4grp_total > 13      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 50.7
(-0.7)
A
51.4
(-0.7)
A
15.6
(-3)
A
108.5
(3)
P
93
B 62.3
(3)
P
7.6
(-3)
A
26.8
(-0.9)
A
56.4
(2.4)
A
55
C 54.3
(0.9)
P
16.2
(-2.3)
A
7.6
(-3)
A
79.6
(3)
P
72
avr 55.8
(0.6)
25.1
(-2.2)
16.7
(-3)
81.5
(3)
65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 47
(1.3)
A
37.2
(0.3)
A
64.4
(3)
P
29.5
(-0.4)
A
13.9
(-2)
A
3.5
(-3)
A
61
B 40.4
(0.9)
P
58.9
(3)
P
5.2
(-3)
A
26.3
(-0.6)
A
17.3
(-1.6)
A
19.9
(-1.4)
A
54
C 29.4
(-0.6)
A
45.8
(0.9)
P
45.2
(0.9)
A
68.1
(3)
P
3.4
(-3)
A
13.8
(-2)
A
65
avr 38.9
(1.6)
47.3
(3)
38.3
(1.5)
41.3
(2)
11.5
(-3)
12.4
(-2.8)
36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.5
(3)
A
11.2
(-0)
A
4.1
(-3)
A
15.9
(1.9)
P
14
B 19.9
(3)
P
1.9
(-3)
A
6.2
(-1.6)
A
12
(0.4)
A
18
C 18
(3)
P
4.7
(-2.2)
A
2.7
(-3)
A
13.4
(1.2)
P
15
avr 18.8
(3)
5.9
(-2.3)
4.3
(-3)
13.8
(0.9)
15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 8.7
(0.6)
A
13.2
(2.6)
A
14
(3)
P
7.5
(0)
A
4.2
(-1.5)
A
0.9
(-3)
A
13
B 14
(1.2)
P
19.6
(3)
P
1.3
(-3)
A
7
(-1.1)
A
7
(-1.1)
A
7.4
(-1)
A
18
C 10.9
(1.6)
A
14
(3)
P
11.5
(1.8)
A
13.7
(2.9)
P
1.1
(-3)
A
4.6
(-1.4)
A
13
avr 11.2
(0.7)
15.6
(3)
8.9
(-0.5)
9.4
(-0.2)
4.1
(-3)
4.3
(-2.9)
12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15612
Sequence Type Exemplar sequence
Representative Public ID F14F9.1 NCBI
Target Description F14F9.1 /REP_DB=WormBase Gene ID /WP=CE24900 /GEN=srh-130 /TR=Q9GUC3 /GB=AAF98620.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071978(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_071978 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-130) (srh-130) mRNA, complete cds. 11/11 None
SNAP00000039413 ENSEMBL cdna:SNAP chromosome:CEL140:V:5151125:5152774:1 11/11 None
GENEFINDER00000039416 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5151125:5152774:1 11/11 None
F14F9.1 ENSEMBL cdna:known chromosome:CEL140:V:5150993:5152795:1 gene:F14F9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5150992-5152795(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-130
Ensembl F14F9.1
Entrez Gene 191884 Entrez gene
SwissProt Q9GUC3 EMBL-EBI
WormBase CE24900 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504379 Serpentine Receptor, class H family member (srh-130) [Caenorhabditis elegans] gb|AAF98620.1| Serpentine receptor, class h protein 130 [Caenorhabditis elegans] 1.0E-177
blast E89042 protein F14F9.1 [imported] - Caenorhabditis elegans 1.0E-174
blast NP_504379 Serpentine Receptor, class H family member (srh-130) [Caenorhabditis elegans] gb|AAF98620.1| Serpentine receptor, class h protein 130 [Caenorhabditis elegans] 1.0E-147
blast E89042 protein F14F9.1 [imported] - Caenorhabditis elegans 1.0E-147
blast NP_504379 Serpentine Receptor, class H family member (srh-130) [Caenorhabditis elegans] gb|AAF98620.1| Serpentine receptor, class h protein 130 [Caenorhabditis elegans] 1.0E-142
blast E89042 protein F14F9.1 [imported] - Caenorhabditis elegans 1.0E-142
blast CAE64082 Hypothetical protein CBG08687 [Caenorhabditis briggsae] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.5E-120
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504379.1 7 17-39,59-81,96-118,138-160,194-216,237-259,274-296
F14F9.1 7 17-39,59-81,96-118,138-160,194-216,237-259,274-296
SNAP00000039413 6 13-35,50-72,93-115,150-172,193-215,230-252
GENEFINDER00000039416 6 44-66,76-98,118-140,174-196,217-239,254-276
Sequence
Target Sequence
>C. ELEGANS:191457_AT
atgcattcatttttattctgccaatcacgtttacaccgcctgatcagacatatggaaagc
aatatgtaaaacagatgcttccgtgtctgcctcaagaaatatttgatcatccggattttt
acgtgtacgccatagaaatcactctactcactttcattatcggctctgcggcatttgtga
taactggtgaagttatattttattttacgagaattgttgtatatttgtccagcacaaaag
ctaaatcacagaaaacgtataagcttcaattgcacttttttatttgtttaactattcaaa
ttacaattccacttttaatagtaattgttccgattgtttatattgtttttgcatttgcaa
atagtcattttgatcaaattctcaacaacatttcgctcaacataatggcttttcatggac
tcatttcaagtgcagttatgcttaccattcataaaccttatcgtaaagctgttttgaaaa
tgcttggtttcacctatataaaaacgaaagtcaatagaagcgcagtacacatggatggaa
c


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
ATGCATTCATTTTTATTCTGCCAAT 546 43 452 Antisense
TTATTCTGCCAATCACGTTTACACC 21 679 464 Antisense
CGTTTACACCGCCTGATCAGACATA 106 247 479 Antisense
AAAACAGATGCTTCCGTGTCTGCCT 269 131 519 Antisense
TCATCCGGATTTTTACGTGTACGCC 243 621 558 Antisense
GTACGCCATAGAAATCACTCTACTC 20 457 576 Antisense
TTATCGGCTCTGCGGCATTTGTGAT 190 681 608 Antisense
GAATTGTTGTATATTTGTCCAGCAC 616 323 662 Antisense
TTCTCAACAACATTTCGCTCAACAT 692 691 830 Antisense
AAGTGCAGTTATGCTTACCATTCAT 671 157 879 Antisense
GAAGCGCAGTACACATGGATGGAAC 400 343 968 Antisense
Sequence Source Affymetrix Proprietary Database