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Cluster Members Consensus/Exemplar |
GeneChip Array Information |
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191457_at |
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C. elegans Genome Array |
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Nematode |
Probe Design Information |
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affy.Ce.15612
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Exemplar sequence
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F14F9.1 NCBI
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F14F9.1 /REP_DB=WormBase Gene ID /WP=CE24900 /GEN=srh-130 /TR=Q9GUC3 /GB=AAF98620.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
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This cluster is supported by a Sanger Annotation. |
Annotation Method Description |
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This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s). |
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This is a grade A annotation. |
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NM_071978(11) |
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NM_071978 NCBI |
Caenorhabditis elegans Serpentine Receptor, class H family member (srh-130) (srh-130) mRNA, complete cds. |
11/11 |
None |
SNAP00000039413 ENSEMBL |
cdna:SNAP chromosome:CEL140:V:5151125:5152774:1 |
11/11 |
None |
GENEFINDER00000039416 ENSEMBL |
cdna:GeneFinder chromosome:CEL140:V:5151125:5152774:1 |
11/11 |
None |
F14F9.1 ENSEMBL |
cdna:known chromosome:CEL140:V:5150993:5152795:1 gene:F14F9.1 |
11/11 |
None | |
There are no noteworthy cross hybridizing mRNAs found for this probe set. | |
Genomic Alignment of Consensus/Exemplar Sequence |
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Wormbase March 2004 |
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chrV:5150992-5152795(+) |
100.0 |
100.0 |
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Public Domain and Genome References |
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7TM chemoreceptor, srh family
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srh-130
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F14F9.1
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191884 Entrez gene
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Q9GUC3 EMBL-EBI
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CE24900 Wormbase
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Functional Annotations |
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16020 |
membrane |
inferred from electronic annotation |
QuickGO AmiGO |
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4930 |
G-protein coupled receptor activity |
inferred from electronic annotation |
QuickGO AmiGO | |
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blast |
NP_504379 |
Serpentine Receptor, class H family member (srh-130) [Caenorhabditis elegans] gb|AAF98620.1| Serpentine receptor, class h protein 130 [Caenorhabditis elegans] |
1.0E-177 |
blast |
E89042 |
protein F14F9.1 [imported] - Caenorhabditis elegans |
1.0E-174 |
blast |
NP_504379 |
Serpentine Receptor, class H family member (srh-130) [Caenorhabditis elegans] gb|AAF98620.1| Serpentine receptor, class h protein 130 [Caenorhabditis elegans] |
1.0E-147 |
blast |
E89042 |
protein F14F9.1 [imported] - Caenorhabditis elegans |
1.0E-147 |
blast |
NP_504379 |
Serpentine Receptor, class H family member (srh-130) [Caenorhabditis elegans] gb|AAF98620.1| Serpentine receptor, class h protein 130 [Caenorhabditis elegans] |
1.0E-142 |
blast |
E89042 |
protein F14F9.1 [imported] - Caenorhabditis elegans |
1.0E-142 |
blast |
CAE64082 |
Hypothetical protein CBG08687 [Caenorhabditis briggsae] |
1.0E-136 | |
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Pfam |
IPR003003 EMBL-EBI |
7TM chemoreceptor, subfamily 2 |
1.0E-126 |
Pfam |
IPR003003 EMBL-EBI |
7TM chemoreceptor, subfamily 2 |
1.0E-126 |
Pfam |
IPR003003 EMBL-EBI |
7TM chemoreceptor, subfamily 2 |
7.5E-120 |
NP_504379.1 |
7 |
17-39,59-81,96-118,138-160,194-216,237-259,274-296 |
F14F9.1 |
7 |
17-39,59-81,96-118,138-160,194-216,237-259,274-296 |
SNAP00000039413 |
6 |
13-35,50-72,93-115,150-172,193-215,230-252 |
GENEFINDER00000039416 |
6 |
44-66,76-98,118-140,174-196,217-239,254-276 | |
Sequence |
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>C. ELEGANS:191457_AT
atgcattcatttttattctgccaatcacgtttacaccgcctgatcagacatatggaaagc
aatatgtaaaacagatgcttccgtgtctgcctcaagaaatatttgatcatccggattttt
acgtgtacgccatagaaatcactctactcactttcattatcggctctgcggcatttgtga
taactggtgaagttatattttattttacgagaattgttgtatatttgtccagcacaaaag
ctaaatcacagaaaacgtataagcttcaattgcacttttttatttgtttaactattcaaa
ttacaattccacttttaatagtaattgttccgattgtttatattgtttttgcatttgcaa
atagtcattttgatcaaattctcaacaacatttcgctcaacataatggcttttcatggac
tcatttcaagtgcagttatgcttaccattcataaaccttatcgtaaagctgttttgaaaa
tgcttggtttcacctatataaaaacgaaagtcaatagaagcgcagtacacatggatggaa
c
BLASTn GenBank NR |
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ATGCATTCATTTTTATTCTGCCAAT |
546 |
43 |
452 |
Antisense |
TTATTCTGCCAATCACGTTTACACC |
21 |
679 |
464 |
Antisense |
CGTTTACACCGCCTGATCAGACATA |
106 |
247 |
479 |
Antisense |
AAAACAGATGCTTCCGTGTCTGCCT |
269 |
131 |
519 |
Antisense |
TCATCCGGATTTTTACGTGTACGCC |
243 |
621 |
558 |
Antisense |
GTACGCCATAGAAATCACTCTACTC |
20 |
457 |
576 |
Antisense |
TTATCGGCTCTGCGGCATTTGTGAT |
190 |
681 |
608 |
Antisense |
GAATTGTTGTATATTTGTCCAGCAC |
616 |
323 |
662 |
Antisense |
TTCTCAACAACATTTCGCTCAACAT |
692 |
691 |
830 |
Antisense |
AAGTGCAGTTATGCTTACCATTCAT |
671 |
157 |
879 |
Antisense |
GAAGCGCAGTACACATGGATGGAAC |
400 |
343 |
968 |
Antisense | |
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Affymetrix Proprietary Database |