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[191456_s_at] 7TM chemoreceptor, str family /// 7TM chemoreceptor, str family

Description T28A11.1 /REP_DB=WormBase Gene ID /WP=CE14281 /GEN=str-64 /TR=P91524 /GB=AAC48112.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 52      4grp_total > 11      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 29.8
(-1.6)
A 		3.4
(-3)
A 		8.9
(-2.7)
A 		117.3
(3)
P 		114
B 32.5
(-0.6)
A 		21.8
(-1.5)
A 		2.7
(-3)
A 		77.4
(3)
P 		75
C 18.4
(-2.4)
A 		28.8
(-1.8)
A 		7.6
(-3)
A 		111.3
(3)
P 		104
avr 26.9
(-1.7) 		18
(-2.3) 		6.4
(-3) 		102
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 22.4
(-0.6)
A 		2.4
(-3)
A 		53.1
(3)
A 		9.1
(-2.2)
A 		24.3
(-0.4)
A 		3.4
(-2.9)
A 		51
B 12.8
(-3)
A 		27.1
(-0.1)
A 		42.9
(3)
A 		33.3
(1.1)
A 		32.9
(1)
A 		12.6
(-3)
A 		30
C 16.1
(-3)
A 		32.9
(0.5)
A 		44.8
(3)
A 		40.6
(2.1)
M 		24.6
(-1.2)
A 		19.9
(-2.2)
A 		29
avr 17.1
(-2.1) 		20.8
(-1.5) 		46.9
(3) 		27.7
(-0.3) 		27.3
(-0.4) 		12
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.9
(0.7)
A 		0.7
(-3)
A 		2.3
(-2.4)
A 		17.2
(3)
P 		17
B 10.4
(0.7)
A 		5.4
(-1.2)
A 		0.6
(-3)
A 		16.5
(3)
P 		16
C 6.1
(-1.7)
A 		8.3
(-0.9)
A 		2.7
(-3)
A 		18.8
(3)
P 		16
avr 9.1
(-0.2) 		4.8
(-1.9) 		1.9
(-3) 		17.5
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.1
(-1.2)
A 		0.9
(-2.9)
A 		11.6
(3)
A 		2.3
(-2.2)
A 		7.3
(0.6)
A 		0.8
(-3)
A 		11
B 4.4
(-3)
A 		9
(0.1)
A 		10.4
(1)
A 		8.8
(-0.1)
A 		13.4
(3)
A 		4.7
(-2.8)
A 		9
C 6
(-3)
A 		10
(1.4)
A 		11.4
(3)
A 		8.2
(-0.6)
M 		8
(-0.8)
A 		6.7
(-2.2)
A 		5
avr 4.8
(-2.4) 		6.6
(-0.9) 		11.1
(3) 		6.4
(-1) 		9.6
(1.7) 		4.1
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191456_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14903
Sequence Type Exemplar sequence
Representative Public ID T28A11.1 NCBI
Target Description T28A11.1 /REP_DB=WormBase Gene ID /WP=CE14281 /GEN=str-64 /TR=P91524 /GB=AAC48112.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071530(11), NM_071506(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071530 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-63) (str-63) mRNA, complete cds. 11/11 None
NM_071506 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-64) (str-64) mRNA, complete cds. 11/11 None
SNAP00000020314 ENSEMBL cdna:SNAP chromosome:CEL140:V:3351497:3352599:1 11/11 None
SNAP00000028220 ENSEMBL cdna:SNAP chromosome:CEL140:V:3283150:3284355:1 11/11 None
GENEFINDER00000028229 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3281654:3284474:1 11/11 None
T28A11.1 ENSEMBL cdna:known chromosome:CEL140:V:3283150:3284355:1 gene:T28A11.1 11/11 None
C17B7.1 ENSEMBL cdna:known chromosome:CEL140:V:3351392:3352599:1 gene:C17B7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3283149-3284355(+) 100.0 100.0
chrV:3351391-3352599(+) 94.96 94.96
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
7TM chemoreceptor, str family
Gene Symbol str-63
str-64
Ensembl T28A11.1
C17B7.1
Entrez Gene 191981 Entrez gene
191982 Entrez gene
SwissProt O45161 EMBL-EBI
P91524 EMBL-EBI
WormBase CE16849 Wormbase
CE14281 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04405 Seven tm receptor protein 63 [Caenorhabditis elegans] ref|NP_503931.1| Seven TM Receptor family member (str-63) [Caenorhabditis elegans] 0.0
blast NP_503907 Seven TM Receptor family member (str-64) [Caenorhabditis elegans] gb|AAC48112.1| Seven tm receptor protein 64 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 3.8E-47
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503931.1 7 10-31,43-65,85-107,128-150,196-218,242-264,279-301
NP_503907.1 7 10-31,43-65,85-107,128-150,196-218,242-264,279-301
T28A11.1 7 10-31,43-65,85-107,128-150,196-218,242-264,279-301
C17B7.1 7 10-31,43-65,85-107,128-150,196-218,242-264,279-301
SNAP00000020314 6 7-26,57-79,92-114,161-183,207-229,244-266
SNAP00000028220 7 10-31,43-65,85-107,128-150,196-218,242-264,279-301
GENEFINDER00000028229 6 190-212,232-254,275-297,343-365,389-411,426-448
Sequence
Target Sequence 
>C. ELEGANS:191456_S_AT
ggctatcttatgattatcgttccatttgtcattggtggattttttgcggttatggtggaa
atgctaattgccaaggataaaatgttggatgataatttgagcaaactaatctttgaaaat
tatcaactactaatatcagagctttcaaaatacaatatcacaccctacaatttcgatggc
tcagtgaattggggaaattttggacttcttgttattgcggttttcctcaattctttgggc
tacctcgtcatactttattgtggagttcaaatgcatttgaacatgaaaaaggagctggcg
aagctttcaatttctaatcaggaacttcaacgacagtttttcaaggctctaattgctcag
agcattggtccaacgatatttttggtcttgccaatggggcctttcctattgagtccccta
attcctggattaaatgtcaattggcagtcaggatggatattttgtctagttggagcgtat
tcgccatttgatactatcatgtttatgatgattgtgtcagaatatagaagcttgctgaaa
aatcgagttggttatacagtttctgcagctactccagattatcgaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTATCTTATGATTATCGTTCCAT 602 537 400 Antisense
TCGTTCCATTTGTCATTGGTGGATT 216 603 416 Antisense
AAAATACAATATCACACCCTACAAT 274 133 546 Antisense
TCGATGGCTCAGTGAATTGGGGAAA 431 587 572 Antisense
GACTTCTTGTTATTGCGGTTTTCCT 627 371 602 Antisense
TTTTCCTCAATTCTTTGGGCTACCT 539 677 620 Antisense
GCTACCTCGTCATACTTTATTGTGG 464 303 638 Antisense
TTGGCAGTCAGGATGGATATTTTGT 647 707 840 Antisense
ATCGAGTTGGTTATACAGTTTCTGC 82 35 941 Antisense
GTTATACAGTTTCTGCAGCTACTCC 676 447 950 Antisense
GCAGCTACTCCAGATTATCGAACTC 16 315 964 Antisense
Sequence Source Affymetrix Proprietary Database