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[191453_at] 7TM chemoreceptor, str family

Description F10D2.1 /REP_DB=WormBase Gene ID /WP=CE09312 /GEN=str-204 /TR=O16921 /GB=AAC48232.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 50      4grp_total > 28      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 52.3
(1.8)
A 		62.4
(3)
A 		13.9
(-3)
A 		56.4
(2.3)
A 		49
B 45.7
(-0)
A 		79.6
(3)
A 		54.8
(0.8)
A 		12.3
(-3)
A 		67
C 72.1
(-0.4)
A 		39.7
(-3)
A 		48.7
(-2.3)
A 		114.9
(3)
P 		75
avr 56.7
(1.8) 		60.6
(2.8) 		39.1
(-3) 		61.2
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 102.9
(3)
P 		28.9
(-1.6)
A 		90.9
(2.3)
P 		61.5
(0.4)
M 		6.7
(-3)
A 		44.6
(-0.6)
A 		96
B 64.8
(0.2)
P 		59
(-0.4)
A 		44.1
(-1.8)
A 		94.1
(3)
P 		41.3
(-2.1)
A 		31.9
(-3)
A 		62
C 27.7
(-3)
A 		38.6
(-1.2)
A 		32.1
(-2.3)
A 		63.9
(3)
A 		37.7
(-1.3)
A 		49.4
(0.6)
P 		36
avr 65.1
(1.9) 		42.2
(-1.2) 		55.7
(0.6) 		73.2
(3) 		28.6
(-3) 		42
(-1.2) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 19
(3)
A 		13.5
(0.9)
A 		3.6
(-3)
A 		8.3
(-1.2)
A 		15
B 14.6
(1.2)
A 		19.7
(3)
A 		12.7
(0.5)
A 		2.6
(-3)
A 		17
C 23.9
(3)
A 		11.4
(-3)
A 		17
(-0.3)
A 		19.4
(0.8)
P 		13
avr 19.2
(3) 		14.9
(0.2) 		11.1
(-2.3) 		10.1
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 19
(2.7)
P 		10.3
(-0.2)
A 		19.8
(3)
P 		15.6
(1.6)
M 		2
(-3)
A 		10.9
(0)
A 		18
B 22.5
(2)
P 		19.6
(0.8)
A 		10.7
(-3)
A 		24.9
(3)
P 		16.8
(-0.4)
A 		11.9
(-2.5)
A 		14
C 10.3
(-1.5)
A 		11.8
(-0.4)
A 		8.2
(-3)
A 		12.8
(0.3)
A 		12.2
(-0.1)
A 		16.5
(3)
P 		8
avr 17.3
(2.6) 		13.9
(-0.1) 		12.9
(-0.9) 		17.8
(3) 		10.3
(-3) 		13.1
(-0.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191453_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12406
Sequence Type Exemplar sequence
Representative Public ID F10D2.1 NCBI
Target Description F10D2.1 /REP_DB=WormBase Gene ID /WP=CE09312 /GEN=str-204 /TR=O16921 /GB=AAC48232.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072416(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072416 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-204) (str-204) mRNA, complete cds. 11/11 None
SNAP00000033813 ENSEMBL cdna:SNAP chromosome:CEL140:V:7162283:7163608:1 11/11 None
GENEFINDER00000033815 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7162283:7163608:1 11/11 None
F10D2.1 ENSEMBL cdna:known chromosome:CEL140:V:7162283:7163608:1 gene:F10D2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7162283-7163609(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-204
Ensembl F10D2.1
Entrez Gene 179102 Entrez gene
SwissProt O16921 EMBL-EBI
WormBase CE09312 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504817 Seven TM Receptor family member (str-204) [Caenorhabditis elegans] gb|AAC48232.1| Seven tm receptor protein 204 [Caenorhabditis elegans] 0.0
blast CAE71848 Hypothetical protein CBG18890 [Caenorhabditis briggsae] 4.0E-80
blast CAA92751 Hypothetical protein M7.13 [Caenorhabditis elegans] ref|NP_502071.1| Seven TM Receptor family member (str-3) [Caenorhabditis elegans] 2.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.4E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.4E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504817.1 7 10-32,44-66,92-114,134-156,202-224,251-273,288-310
F10D2.1 7 10-32,44-66,92-114,134-156,202-224,251-273,288-310
SNAP00000033813 7 10-32,44-66,92-114,134-156,202-224,251-273,288-310
GENEFINDER00000033815 7 10-32,44-66,92-114,134-156,202-224,251-273,288-310
Sequence
Target Sequence 
>C. ELEGANS:191453_AT
tggaatacattgcaccctacttttatgagttggacaaaaatggaaatctggaaatctact
ggcccagttttgttggcattggtgtgaactctgttatcatcaatgtttctattgcaacca
ttatctattttgggaaaaaatgctacacaatcctcaactctcttgtaccacacactagca
agtctgaaaagaatcgacgtcttcaaaagcagttgtactttgctcttgtcactcaaaccc
tcatcccaattgttttaatgcatattccagtctctacgctttacttttccgcgttctttt
gcattgatcttggatccatcagcggaatcgctccattggcaattgctctctacccaacgc
ttgatccacttcccactatgttcattattggacattacagaactgtcgtgttcaattgga
ttttatggttgccacgaaaatttggaatctgttccaaaaattcggtaaatcctgaaattg
atgaaacaactgttcaagatggacctgatgcagttacccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAATACATTGCACCCTACTTTTA 356 547 551 Antisense
ACTGGCCCAGTTTTGTTGGCATTGG 408 97 608 Antisense
TGGCATTGGTGTGAACTCTGTTATC 645 545 624 Antisense
TACACAATCCTCAACTCTCTTGTAC 299 643 694 Antisense
TGTACTTTGCTCTTGTCACTCAAAC 559 559 764 Antisense
AACCCTCATCCCAATTGTTTTAATG 52 147 786 Antisense
TAATGCATATTCCAGTCTCTACGCT 237 637 806 Antisense
TTTTCCGCGTTCTTTTGCATTGATC 543 677 835 Antisense
CTTGGATCCATCAGCGGAATCGCTC 148 219 859 Antisense
GGAATCGCTCCATTGGCAATTGCTC 477 533 874 Antisense
GATGGACCTGATGCAGTTACCCAAA 388 407 1048 Antisense
Sequence Source Affymetrix Proprietary Database