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[191452_at]

Description K12G11.5 /REP_DB=WormBase Gene ID /WP=CE12216 /TR=O45689 /GB=CAB04605.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 48      4grp_total > 19      6grp_cgc > 17      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 6.7
(-2)
A 		27
(3)
A 		2.8
(-3)
A 		12.6
(-0.6)
A 		24
B 2.5
(-2.6)
A 		9.3
(0.3)
A 		15.9
(3)
A 		1.5
(-3)
A 		14
C 20.9
(-1)
A 		12.1
(-2)
A 		3.5
(-3)
A 		55.5
(3)
A 		52
avr 10
(-2) 		16.1
(0.3) 		7.4
(-3) 		23.2
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 27.9
(3)
P 		25.5
(2.4)
A 		13.4
(-0.6)
A 		4.1
(-3)
A 		4
(-3)
A 		26.9
(2.7)
A 		24
B 8.6
(-1.4)
A 		2.5
(-3)
A 		12.3
(-0.5)
A 		26.1
(3)
A 		25.6
(2.9)
A 		12.8
(-0.4)
A 		24
C 21.3
(3)
A 		11
(-0.3)
A 		3.6
(-2.6)
A 		5.2
(-2.1)
A 		2.5
(-3)
A 		17.6
(1.8)
A 		19
avr 19.3
(3) 		13
(-1) 		9.8
(-3) 		11.8
(-1.7) 		10.7
(-2.4) 		19.1
(2.9) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.4
(-1)
A 		5.9
(3)
A 		0.7
(-3)
A 		1.9
(-1.6)
A 		5
B 0.8
(-2.1)
A 		2.3
(0.5)
A 		3.7
(3)
A 		0.3
(-3)
A 		3
C 6.9
(1.2)
A 		3.5
(-1.3)
A 		1.2
(-3)
A 		9.4
(3)
A 		8
avr 3.4
(1.5) 		3.9
(3) 		1.9
(-3) 		3.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.1
(0)
P 		9.1
(3)
A 		2.9
(-1.6)
A 		1
(-3)
A 		1.2
(-2.9)
A 		6.5
(1.1)
A 		8
B 3
(-1.6)
A 		0.8
(-3)
A 		3
(-1.6)
A 		6.9
(0.8)
A 		10.4
(3)
A 		4.8
(-0.5)
A 		10
C 7.9
(3)
A 		3.3
(-0.9)
A 		0.9
(-2.9)
A 		1
(-2.8)
A 		0.8
(-3)
A 		5.9
(1.3)
A 		7
avr 5.3
(2.3) 		4.4
(0.7) 		2.3
(-3) 		3
(-1.8) 		4.1
(0.2) 		5.7
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191452_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13688
Sequence Type Exemplar sequence
Representative Public ID K12G11.5 NCBI
Target Description K12G11.5 /REP_DB=WormBase Gene ID /WP=CE12216 /TR=O45689 /GB=CAB04605.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073592, NM_001028886
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000018975 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11894612:11898133:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028886 3/11 Cross Hyb Matching Probes None
NM_073592 7/11 Cross Hyb Matching Probes None
SNAP00000018968 4/11 Cross Hyb Matching Probes None
K12G11.5 7/11 Cross Hyb Matching Probes None
K12G11.6 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11894399-11897974(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04605 Hypothetical protein K12G11.5 [Caenorhabditis elegans] ref|NP_505993.2| Serpentine Receptor, class X family member (srx-76) [Caenorhabditis elegans] 1.0E-146
blast CAF31481 Hypothetical protein K12G11.6 [Caenorhabditis elegans] ref|NP_001024057.1| K12G11.6 [Caenorhabditis elegans] 4.0E-65
blast CAE75345 Hypothetical protein CBG23325 [Caenorhabditis briggsae] 7.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 8.5E-85
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 8.3E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000018975 5 7-29,44-66,124-146,173-195,202-224
Sequence
Target Sequence 
>C. ELEGANS:191452_AT
cattttactaaccttgatcgaacatcgtttttggtattttatttgtgcaacctttgtctg
gcaaacaatgcatgtaattgatggatttgtcatgataatgttcaacgaccgattaagttt
tctgaaaattacactttttgcaagttcaccaacacaattgagtgtagtagaagttagttc
gcaaagatcaccggcaagaagagcaccaatagtaatttactactttgacaagaagcttga
aatgtgtcttccgtttctctactctggatgtggtggtaatacaaatcgttttgatgattc
cgaaatgtgcaatttgagatgccgagcagcagataaaggcatatgcggtggtggctcaaa
agcactggcaaactgttcgaacagaaacaaaacgtgcccaaaaggatctagatgcatcat
aatggcatttggacttggattatgttgtgatgaaaaaattcaagaagcatggcgacaaga
aaatcatccagtttgtaatattccaaatcatgaagtcgtcactgaaacagcttggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTTACTAACCTTGATCGAACAT 627 213 753 Antisense
TCGAACATCGTTTTTGGTATTTTAT 191 601 770 Antisense
ATTTGTGCAACCTTTGTCTGGCAAA 25 19 793 Antisense
GTTCAACGACCGATTAAGTTTTCTG 293 395 852 Antisense
ACTTTTTGCAAGTTCACCAACACAA 342 101 885 Antisense
GTTAGTTCGCAAAGATCACCGGCAA 495 447 925 Antisense
GATCACCGGCAAGAAGAGCACCAAT 412 419 938 Antisense
TGAAATGTGTCTTCCGTTTCTCTAC 14 573 990 Antisense
AAGGCATATGCGGTGGTGGCTCAAA 689 159 1088 Antisense
AAAAGCACTGGCAAACTGTTCGAAC 49 133 1110 Antisense
GAAGTCGTCACTGAAACAGCTTGGT 124 337 1264 Antisense
Sequence Source Affymetrix Proprietary Database