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[191451_at] thioredoxin-like protein

Description Y54E10A.3 /REP_DB=WormBase Gene ID /WP=CE24447 /TR=Q9N2K6 /GB=AAF60759.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=thioredoxin-like protein
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 72      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 65      6grp_total > 72      4grp_total > 56      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 984
1 2 3 4 range
A 802.2
(-3)
P 		1573.2
(2.8)
P 		1597.3
(3)
P 		841.9
(-2.7)
P 		795
B 806.1
(-2.1)
P 		1277.8
(1)
P 		1579.7
(3)
P 		669.7
(-3)
P 		910
C 850.5
(-1.3)
P 		1254
(1.6)
P 		1456.6
(3)
P 		613.7
(-3)
P 		843
avr 819.6
(-2.2) 		1368.3
(1.7) 		1544.5
(3) 		708.4
(-3) 		836

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 869
1 2 3 4 5 6 range
A 1245.6
(0.4)
P 		869.5
(-2.2)
P 		1626
(3)
P 		1264.5
(0.5)
P 		1304.7
(0.8)
P 		757.4
(-3)
P 		869
B 1376.3
(-1.8)
P 		1329.3
(-3)
P 		1394
(-1.4)
P 		1415.9
(-0.9)
P 		1571.9
(3)
P 		1367.5
(-2.1)
P 		243
C 879.9
(-3)
P 		1393.6
(1.7)
P 		1050.9
(-1.4)
P 		1531.3
(3)
P 		1002.6
(-1.9)
P 		1365.5
(1.5)
P 		651
avr 1167.3
(-2.9) 		1197.5
(-2.2) 		1357
(1.8) 		1403.9
(3) 		1293.1
(0.2) 		1163.5
(-3) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 404
1 2 3 4 range
A 292.1
(0.4)
P 		341.5
(1.4)
P 		417.6
(3)
P 		123.2
(-3)
P 		294
B 257.1
(0.1)
P 		315.6
(1.6)
P 		366
(3)
P 		142.7
(-3)
P 		223
C 281.5
(-0.4)
P 		360.5
(0.8)
P 		507.7
(3)
P 		103.5
(-3)
P 		404
avr 276.9
(0) 		339.2
(1.2) 		430.4
(3) 		123.1
(-3) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 454
1 2 3 4 5 6 range
A 229.6
(-1.7)
P 		309.2
(0.6)
P 		354.1
(1.9)
P 		320.7
(0.9)
P 		393.7
(3)
P 		184.4
(-3)
P 		209
B 478.9
(-0.2)
P 		442.5
(-0.9)
P 		338.5
(-3)
P 		375
(-2.3)
P 		638.6
(3)
P 		509.9
(0.4)
P 		300
C 326.2
(-1.1)
P 		425.2
(2)
P 		267.5
(-3)
P 		307.9
(-1.7)
P 		324.4
(-1.2)
P 		457.1
(3)
P 		190
avr 344.9
(-1.9) 		392.3
(0.3) 		320
(-3) 		334.5
(-2.3) 		452.2
(3) 		383.8
(-0.1) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191451_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.264
Sequence Type Exemplar sequence
Representative Public ID Y54E10A.3 NCBI
Target Description Y54E10A.3 /REP_DB=WormBase Gene ID /WP=CE24447 /TR=Q9N2K6 /GB=AAF60759.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=thioredoxin-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058726(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058726 NCBI Caenorhabditis elegans Y54E10A.3 (Y54E10A.3) mRNA, complete cds. 11/11 None
SNAP00000033834 ENSEMBL cdna:SNAP chromosome:CEL140:I:3217535:3233086:1 11/11 None
GENEFINDER00000033850 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3229449:3233086:1 11/11 None
Y54E10A.3 ENSEMBL cdna:known chromosome:CEL140:I:3229433:3233295:1 gene:Y54E10A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3229448-3233086(+) 100.0 100.0
Public Domain and Genome References
Gene Title thioredoxin-like protein
Ensembl Y54E10A.3
Entrez Gene 171897 Entrez gene
SwissProt Q9N2K6 EMBL-EBI
WormBase CE24447 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258793_AT expressed protein at
CANINE:1600814_AT similar to Thioredoxin-like protein 1 (32 kDa thioredoxin-related protein) cfa
CANINE:1591694_AT similar to Thioredoxin-like protein 1 (32 kDa thioredoxin-related protein) cfa
CANINE_2:CFA.12858.1.A1_AT similar to Thioredoxin-like protein 1 (32 kDa thioredoxin-related protein) cfa
CANINE_2:CFA.9493.1.A1_AT similar to Thioredoxin-like protein 1 (32 kDa thioredoxin-related protein) cfa
CANINE_2:CFAAFFX.1182.1.S1_S_AT similar to Thioredoxin-like protein 1 (32 kDa thioredoxin-related protein) cfa
DROSOPHILA_2:1627497_AT Thioredoxin-like dm
DROSGENOME1:154374_AT Thioredoxin-like dm
CHICKEN:GGA.2083.1.S1_AT thioredoxin-like 1 gga
HG-U133_PLUS_2:201588_AT thioredoxin-like 1 hs
HG-U133A_2:201588_AT thioredoxin-like 1 hs
HG-U133A:201588_AT thioredoxin-like 1 hs
HG-FOCUS:201588_AT thioredoxin-like 1 hs
HU35KSUBA:AA255638_AT thioredoxin-like 1 hs
U133_X3P:G4759273_3P_AT thioredoxin-like 1 hs
HG-U95AV2:32214_AT thioredoxin-like 1 hs
HG-U133_PLUS_2:243664_AT Thioredoxin-like 1 hs
HG-U133B:243664_AT Thioredoxin-like 1 hs
HG-U95D:75649_AT Thioredoxin-like 1 hs
HU35KSUBA:AA429706_AT Thioredoxin-like 1 hs
U133_X3P:HS.114412.0.A1_3P_AT Thioredoxin-like 1 hs
MOUSE430A_2:1436947_A_AT thioredoxin-like 1 mm
MOE430A:1436947_A_AT thioredoxin-like 1 mm
MOUSE430_2:1436947_A_AT thioredoxin-like 1 mm
MOUSE430A_2:1455866_X_AT thioredoxin-like 1 mm
MOE430A:1455866_X_AT thioredoxin-like 1 mm
MOUSE430_2:1455866_X_AT thioredoxin-like 1 mm
MG-U74BV2:107442_AT thioredoxin-like 1 mm
MG-U74AV2:160115_AT thioredoxin-like 1 mm
MOE430A:1423299_AT thioredoxin-like 1 mm
MOUSE430A_2:1423299_AT thioredoxin-like 1 mm
MOUSE430_2:1423299_AT thioredoxin-like 1 mm
MOE430A:1435235_AT thioredoxin-like 1 mm
MOUSE430A_2:1435235_AT thioredoxin-like 1 mm
MOUSE430_2:1435235_AT thioredoxin-like 1 mm
MOE430A:1437906_X_AT thioredoxin-like 1 mm
MOUSE430A_2:1437906_X_AT thioredoxin-like 1 mm
MOUSE430_2:1437906_X_AT thioredoxin-like 1 mm
MOE430A:1437905_AT thioredoxin-like 1 mm
MOUSE430A_2:1437905_AT thioredoxin-like 1 mm
MOUSE430_2:1437905_AT thioredoxin-like 1 mm
MU11KSUBA:AA408650_RC_AT Thioredoxin-like 1 (Txnl1), mRNA mm
MU19KSUBA:TC21316_AT Thioredoxin-like 1 (Txnl1), mRNA mm
MU19KSUBB:TC32549_AT Thioredoxin-like 1 (Txnl1), mRNA mm
RG-U34A:RC_AA875390_AT thioredoxin-like (32kD) rn
RG-U34A:RC_AA875390_G_AT thioredoxin-like (32kD) rn
RG-U34B:RC_AI013376_AT thioredoxin-like (32kD) rn
RAE230A:1391789_AT thioredoxin-like (32kD) rn
RAT230_2:1391789_AT thioredoxin-like (32kD) rn
RAE230A:1380191_S_AT thioredoxin-like (32kD) rn
RAT230_2:1380191_S_AT thioredoxin-like (32kD) rn
RAE230A:1368936_AT thioredoxin-like (32kD) rn
RAT230_2:1368936_AT thioredoxin-like (32kD) rn
RAE230B:1392058_AT thioredoxin-like (32kD) rn
RAT230_2:1392058_AT thioredoxin-like (32kD) rn
RAE230A:1388862_AT Thioredoxin-like (32kD) rn
RAT230_2:1388862_AT Thioredoxin-like (32kD) rn
RAE230B:1391535_AT Thioredoxin-like (32kD) rn
RAT230_2:1391535_AT Thioredoxin-like (32kD) rn
RG-U34A:RC_AA891694_AT Thioredoxin-like (32kD) rn
RG-U34C:RC_AI171984_AT Thioredoxin-like (32kD) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60759 Hypothetical protein Y54E10A.3 [Caenorhabditis elegans] ref|NP_491127.1| Y54E10A.3 [Caenorhabditis elegans] gb|AAF66677.1| thioredoxin-like protein [Caenorhabditis elegans] gb|AAF66636.1| thioredoxin-like protein TXL [Caenorhabditis elegans] 1.0E-160
blast CAE68992 Hypothetical protein CBG14979 [Caenorhabditis briggsae] 1.0E-130
blast CAE68992 Hypothetical protein CBG14979 [Caenorhabditis briggsae] 1.0E-129
blast EAL29599 GA18927-PA [Drosophila pseudoobscura] 2.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR010400 EMBL-EBI Protein of unknown function DUF1000 2.1E-84
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 1.2E-29
Pfam IPR010400 EMBL-EBI Protein of unknown function DUF1000 2.1E-84
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 1.2E-29
Sequence
Target Sequence 
>C. ELEGANS:191451_AT
catggttttccagagcggagtccgcgtggaacaaatgaaaggagccgatgcaaaagcact
ggaaacaatggtgaaaaagtacgcagacaactcggcagccgactcactggttgctggtca
aatggacttgacacctcttgtcgataagaaacaaatggaatgtttgaatgaatctgatga
tactccactgggacgttttctcgaaggaaactgcaatctggtttcagattgtgatgagca
attgatcatctcacttccatttaatcaaccagtcaaagttcattcaattcttattaaagg
agtatcggatcgtgctccaaagaaggtcaaagtgttcattaatcttccgaaaactacgga
tttcgataatgcaacagctctggagccaactcaaatgttggaatttgatgaatcttctat
tcaagggcacggacaagtcgtcgcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGGTTTTCCAGAGCGGAGTCCGC 45 209 246 Antisense
CAGACAACTCGGCAGCCGACTCACT 395 203 329 Antisense
CCGACTCACTGGTTGCTGGTCAAAT 205 263 344 Antisense
AATGGACTTGACACCTCTTGTCGAT 674 161 366 Antisense
GAATCTGATGATACTCCACTGGGAC 386 329 415 Antisense
TCCACTGGGACGTTTTCTCGAAGGA 156 583 429 Antisense
TCATCTCACTTCCATTTAATCAACC 517 619 491 Antisense
GGATTTCGATAATGCAACAGCTCTG 421 509 603 Antisense
ACAGCTCTGGAGCCAACTCAAATGT 407 107 619 Antisense
GAATCTTCTATTCAAGGGCACGGAC 627 327 655 Antisense
CAAGGGCACGGACAAGTCGTCGCGT 107 183 667 Antisense
Sequence Source Affymetrix Proprietary Database