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[191450_at] 7TM chemoreceptor, str family

Description F25E5.12 /REP_DB=WormBase Gene ID /WP=CE17699 /GEN=str-28 /TR=O76658 /GB=AAG24080.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 04      4grp_total > 27      6grp_cgc > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 60
(0.1)
A 		56.1
(-0.9)
A 		47.6
(-3)
A 		71.6
(3)
P 		24
B 66.8
(-1.6)
A 		81.1
(3)
A 		62.4
(-3)
A 		67.6
(-1.3)
P 		19
C 63.8
(-1.9)
M 		97.7
(2.6)
P 		55.8
(-3)
M 		100.3
(3)
P 		45
avr 63.5
(-1) 		78.3
(2.6) 		55.3
(-3) 		79.8
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 66.2
(2.4)
A 		40.1
(-2.3)
A 		55.9
(0.6)
P 		69.3
(3)
A 		47.7
(-0.9)
A 		36.2
(-3)
A 		33
B 81.3
(3)
P 		55.5
(-1.3)
A 		52.2
(-1.8)
A 		56.9
(-1)
A 		46
(-2.9)
A 		45.1
(-3)
A 		36
C 56.9
(0.1)
A 		83.9
(3)
P 		27.4
(-3)
A 		49.8
(-0.6)
A 		46.7
(-1)
A 		35.9
(-2.1)
A 		57
avr 68.1
(3) 		59.8
(1.3) 		45.2
(-1.7) 		58.7
(1.1) 		46.8
(-1.4) 		39.1
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 21.9
(3)
A 		12.2
(-2.1)
A 		12.4
(-2)
A 		10.5
(-3)
P 		11
B 21.3
(3)
A 		20
(1.9)
A 		14.5
(-2.9)
A 		14.4
(-3)
P 		7
C 21.1
(-0.7)
M 		28.1
(3)
P 		19.5
(-1.6)
M 		16.9
(-3)
P 		11
avr 21.4
(3) 		20.1
(2) 		15.5
(-1.7) 		13.9
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 12.2
(-0.7)
A 		14.2
(0.7)
A 		12.2
(-0.7)
P 		17.6
(3)
A 		14.4
(0.8)
A 		8.8
(-3)
A 		9
B 28.3
(3)
P 		18.5
(-0.8)
A 		12.7
(-3)
A 		15.1
(-2.1)
A 		18.7
(-0.7)
A 		16.8
(-1.4)
A 		16
C 21.1
(1.5)
A 		25.6
(3)
P 		7
(-3)
A 		10
(-2)
A 		15.1
(-0.4)
A 		12
(-1.4)
A 		19
avr 20.5
(3) 		19.4
(2.3) 		10.6
(-3) 		14.2
(-0.8) 		16.1
(0.3) 		12.5
(-1.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191450_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11562
Sequence Type Exemplar sequence
Representative Public ID F25E5.12 NCBI
Target Description F25E5.12 /REP_DB=WormBase Gene ID /WP=CE17699 /GEN=str-28 /TR=O76658 /GB=AAG24080.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072520(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072520 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-28) (str-28) mRNA, complete cds. 11/11 None
SNAP00000010686 ENSEMBL cdna:SNAP chromosome:CEL140:V:7474243:7475507:-1 11/11 None
F25E5.12 ENSEMBL cdna:known chromosome:CEL140:V:7474243:7475507:-1 gene:F25E5.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7474243-7475508(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-28
Ensembl F25E5.12
Entrez Gene 191971 Entrez gene
SwissProt O76658 EMBL-EBI
WormBase CE17699 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24080 Seven tm receptor protein 28 [Caenorhabditis elegans] ref|NP_504921.1| Seven TM Receptor family member (str-28) [Caenorhabditis elegans] 0.0
blast CAE66310 Hypothetical protein CBG11560 [Caenorhabditis briggsae] 2.0E-93
blast CAE66310 Hypothetical protein CBG11560 [Caenorhabditis briggsae] 5.0E-90
blast CAE74155 Hypothetical protein CBG21826 [Caenorhabditis briggsae] 1.0E-88
blast CAE74155 Hypothetical protein CBG21826 [Caenorhabditis briggsae] 5.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.4E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504921.1 7 13-32,42-64,90-112,132-154,202-224,248-270,282-304
F25E5.12 7 13-32,42-64,90-112,132-154,202-224,248-270,282-304
SNAP00000010686 7 13-31,44-66,87-109,129-151,199-221,245-267,279-301
Sequence
Target Sequence 
>C. ELEGANS:191450_AT
gcttatttactggttgctctattgcttaataattggtggcttatggtcttatgccacatt
tctctgctcttccgatacaatgacaaatagatatatgagaaatgaaattagatccaacta
tggagttgatataagaaatgtggcatatttcgcacttatgggttataattataatggaac
ggaaaaaacattacgttggaatagtgtgtctacattctcaatgttcgtagtcattcttct
gacccaatacgttatctgtctggtatgcggttttattatgtatagacgaattgaaggaaa
tgcatcatcgacttcgaatcagtatcaaaaacttcagcatcagttttttaaggctttaat
ttaccagcttgctgctccatgcatatgtttccacattccttcatttttcttctacattgc
accattctttgaattagaaatcagcttccgatcaactatcatcatctacggattcaatgt
ttatccattaaccgattcactaatattgctcaccgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTATTTACTGGTTGCTCTATTGC 307 305 402 Antisense
TATGGTCTTATGCCACATTTCTCTG 688 655 443 Antisense
TTCTCTGCTCTTCCGATACAATGAC 511 691 461 Antisense
GTTCGTAGTCATTCTTCTGACCCAA 468 441 624 Antisense
ACGTTATCTGTCTGGTATGCGGTTT 700 93 650 Antisense
GGCTTTAATTTACCAGCTTGCTGCT 193 537 753 Antisense
GCTTGCTGCTCCATGCATATGTTTC 382 307 768 Antisense
ATATGTTTCCACATTCCTTCATTTT 454 19 784 Antisense
TCTTCTACATTGCACCATTCTTTGA 440 617 809 Antisense
AATCAGCTTCCGATCAACTATCATC 237 171 840 Antisense
GATTCACTAATATTGCTCACCGTAA 195 431 895 Antisense
Sequence Source Affymetrix Proprietary Database