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[191448_at] 7TM chemoreceptor, srd family

Description C04E6.10 /REP_DB=WormBase Gene ID /WP=CE25754 /GEN=srd-15 /TR=O01468 /GB=AAK39147.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 12      4grp_total > 21      6grp_cgc > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 28.9
(-0.5)
A 		29.8
(-0.4)
A 		2.4
(-3)
A 		66.5
(3)
A 		64
B 23.7
(-2.3)
A 		23.4
(-3)
A 		26.1
(3)
A 		24
(-1.7)
A 		3
C 53.5
(3)
A 		16.9
(-2.5)
A 		13.9
(-3)
A 		52.3
(2.8)
A 		40
avr 35.4
(0.8) 		23.4
(-1.3) 		14.1
(-3) 		47.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 29.7
(3)
A 		13.7
(-0.4)
A 		23.1
(1.6)
A 		7.9
(-1.7)
A 		7.3
(-1.8)
A 		1.8
(-3)
A 		28
B 21.6
(-0.3)
A 		30.1
(3)
A 		27.9
(2.1)
A 		14.7
(-3)
A 		24.2
(0.7)
A 		17.8
(-1.8)
A 		15
C 20.7
(-2)
A 		37.9
(3)
A 		17.4
(-3)
A 		28.2
(0.2)
A 		29.4
(0.5)
A 		25
(-0.8)
A 		21
avr 24
(1.4) 		27.2
(3) 		22.8
(0.9) 		16.9
(-2) 		20.3
(-0.4) 		14.9
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.5
(3)
A 		6.5
(0.6)
A 		0.6
(-3)
A 		9.7
(2.5)
A 		10
B 7.6
(3)
A 		5.8
(-1.3)
A 		6.1
(-0.6)
A 		5.1
(-3)
A 		3
C 17.7
(3)
A 		4.8
(-3)
A 		4.8
(-3)
A 		8.8
(-1.1)
A 		13
avr 11.9
(3) 		5.7
(-1.6) 		3.8
(-3) 		7.9
(0) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.5
(3)
A 		4.9
(2.3)
A 		5
(2.4)
A 		2
(-1.1)
A 		2.2
(-0.9)
A 		0.4
(-3)
A 		5
B 7.5
(0.5)
A 		10
(3)
A 		6.8
(-0.1)
A 		3.9
(-3)
A 		9.8
(2.8)
A 		6.6
(-0.3)
A 		6
C 7.7
(-0.3)
A 		11.6
(3)
A 		4.4
(-3)
A 		5.7
(-1.9)
A 		9.5
(1.3)
A 		8.4
(0.3)
A 		7
avr 6.9
(0.7) 		8.8
(3) 		5.4
(-1.2) 		3.9
(-3) 		7.2
(1) 		5.1
(-1.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191448_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11992
Sequence Type Exemplar sequence
Representative Public ID C04E6.10 NCBI
Target Description C04E6.10 /REP_DB=WormBase Gene ID /WP=CE25754 /GEN=srd-15 /TR=O01468 /GB=AAK39147.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072137(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072137 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-15) (srd-15) mRNA, complete cds. 11/11 None
GENEFINDER00000001276 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5907609:5908945:-1 11/11 None
C04E6.10 ENSEMBL cdna:known chromosome:CEL140:V:5907609:5908945:-1 gene:C04E6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5907608-5908945(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-15
Ensembl C04E6.10
Entrez Gene 191804 Entrez gene
SwissProt O01468 EMBL-EBI
WormBase CE25754 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39147 Serpentine receptor, class d (delta) protein 15 [Caenorhabditis elegans] ref|NP_504538.1| Serpentine Receptor, class D (delta) family member (srd-15) [Caenorhabditis elegans] 0.0
blast T25510 hypothetical protein C04E6.10 - Caenorhabditis elegans 1.0E-164
blast AAK39147 Serpentine receptor, class d (delta) protein 15 [Caenorhabditis elegans] ref|NP_504538.1| Serpentine Receptor, class D (delta) family member (srd-15) [Caenorhabditis elegans] 1.0E-151
blast T25510 hypothetical protein C04E6.10 - Caenorhabditis elegans 1.0E-132
blast CAE64550 Hypothetical protein CBG09296 [Caenorhabditis briggsae] 1.0E-102
blast CAE64550 Hypothetical protein CBG09296 [Caenorhabditis briggsae] 2.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504538.1 8 13-35,45-67,80-102,106-128,133-155,191-213,242-264,274-296
C04E6.10 8 13-35,45-67,80-102,106-128,133-155,191-213,242-264,274-296
GENEFINDER00000001276 7 13-35,47-69,79-101,103-125,160-182,211-233,243-265
Sequence
Target Sequence 
>C. ELEGANS:191448_AT
ttgttggccctttttgtattctatattccttcttttgtacaagcagcaacttattggacc
agctttgtagatagttccacaatcttacccattacaaagcgaatctatccacaatataat
tttgagcttgaaactggcctgattactggaataacaaatttattttctgtatctgctata
tatgcggtattacacatgaccatccccgttacaccagtctatataactattttcattctt
cgacgaaaaatcctaaaaactcttatgatgagttacaatgtaatgtctaaagaaacaaag
gcaattcatgctcagttgatgaaagcactgacttttcaggcattcattccagtggcagct
tgggcagctgtttatgtctatattggaatgcaatttggtataatcagtggaatatttttc
gaatacatggtattctctacagtaatattcatgcccttactttctccagttgcatatctg
gtttatgtgcgtccataccgattatacattctcagaacgttctgtcggaaatgctctcaa
agtgcagtggagagtaagatccgaacgggattccacacacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTTGGCCCTTTTTGTATTCTATA 53 705 412 Antisense
ATTCTATATTCCTTCTTTTGTACAA 504 11 429 Antisense
AGATAGTTCCACAATCTTACCCATT 47 65 480 Antisense
GAGCTTGAAACTGGCCTGATTACTG 583 387 535 Antisense
TGCGGTATTACACATGACCATCCCC 257 573 594 Antisense
TCAGGCATTCATTCCAGTGGCAGCT 361 623 747 Antisense
GCTTGGGCAGCTGTTTATGTCTATA 560 307 769 Antisense
GTAATATTCATGCCCTTACTTTCTC 483 463 853 Antisense
GTGCGTCCATACCGATTATACATTC 156 479 898 Antisense
GAACGTTCTGTCGGAAATGCTCTCA 62 349 926 Antisense
ATCCGAACGGGATTCCACACACAAT 109 39 970 Antisense
Sequence Source Affymetrix Proprietary Database