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[191446_at]

Description T10H9.6 /REP_DB=WormBase Gene ID /WP=CE25112 /GEN=str-180 /TR=O76415 /GB=AAC19239.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 95      4grp_total > 01      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 39.1
(-3)
A 		39.8
(-2.8)
A 		40.8
(-2.6)
A 		63.8
(3)
A 		25
B 42.8
(-2.7)
A 		41.8
(-3)
A 		45.4
(-1.9)
A 		62.3
(3)
A 		21
C 43.7
(-1.9)
A 		27.4
(-3)
P 		38
(-2.3)
A 		117.4
(3)
P 		90
avr 41.9
(-2.3) 		36.3
(-3) 		41.4
(-2.3) 		81.2
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 30.8
(-2.3)
A 		21.2
(-3)
A 		54.8
(-0.5)
M 		31.9
(-2.2)
A 		102.5
(3)
P 		79.2
(1.3)
A 		81
B 53.1
(-1.4)
A 		40.7
(-3)
A 		42
(-2.8)
A 		43.4
(-2.7)
A 		72.4
(1.1)
P 		87.6
(3)
P 		47
C 29.5
(-2.6)
A 		89.8
(1.5)
P 		22.9
(-3)
A 		111.4
(3)
A 		86.6
(1.3)
A 		76
(0.6)
P 		89
avr 37.8
(-3) 		50.6
(-1.4) 		39.9
(-2.7) 		62.2
(-0) 		87.2
(3) 		80.9
(2.2) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 14.2
(3)
A 		8.6
(-3)
A 		10.7
(-0.8)
A 		9.3
(-2.3)
A 		6
B 13.7
(3)
A 		10.3
(-3)
A 		10.5
(-2.6)
A 		13.3
(2.3)
A 		3
C 14.5
(0.3)
A 		7.9
(-3)
P 		13.2
(-0.3)
A 		19.8
(3)
P 		12
avr 14.1
(3) 		8.9
(-3) 		11.5
(0) 		14.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.7
(-3)
A 		7.6
(-2.5)
A 		11.9
(-1.5)
M 		8.1
(-2.4)
A 		30.9
(3)
P 		19.3
(0.2)
A 		25
B 18.5
(-0.8)
A 		13.5
(-2.1)
A 		10.2
(-3)
A 		11.5
(-2.7)
A 		29.4
(2.1)
P 		32.7
(3)
P 		23
C 10.9
(-1.6)
A 		27.4
(2.8)
P 		5.8
(-3)
A 		22.4
(1.5)
A 		28
(3)
A 		25.4
(2.3)
P 		22
avr 11.7
(-2.3) 		16.2
(-0.9) 		9.3
(-3) 		14
(-1.6) 		29.4
(3) 		25.8
(1.9) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191446_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11300
Sequence Type Exemplar sequence
Representative Public ID T10H9.6 NCBI
Target Description T10H9.6 /REP_DB=WormBase Gene ID /WP=CE25112 /GEN=str-180 /TR=O76415 /GB=AAC19239.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028962(11), NM_001028961(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028962 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-180) (str-180) mRNA, complete cds. 11/11 None
NM_001028961 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-180) (str-180) mRNA, complete cds. 11/11 None
SNAP00000019220 ENSEMBL cdna:SNAP chromosome:CEL140:V:6669994:6671435:-1 11/11 None
GENEFINDER00000019223 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6664853:6671435:-1 11/11 None
T10H9.6 ENSEMBL cdna:known chromosome:CEL140:V:6669994:6671413:-1 gene:T10H9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6669994-6671436(-) 100.0 100.0
Public Domain and Genome References
Ensembl T10H9.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024133 Seven TM Receptor family member (str-180) [Caenorhabditis elegans] gb|AAX22283.1| Seven tm receptor protein 180, isoform b [Caenorhabditis elegans] 0.0
blast NP_872135 Peroxisomal Membrane Protein related family member (pmp-5) [Caenorhabditis elegans] gb|AAO25995.2| Peroxisomal membrane protein related protein 5, isoform b [Caenorhabditis elegans] 0.0
blast NP_504689 Peroxisomal Membrane Protein related family member (pmp-5) [Caenorhabditis elegans] gb|AAC19238.1| Peroxisomal membrane protein related protein 5, isoform a [Caenorhabditis elegans] 0.0
blast NP_001024131 Peroxisomal Membrane Protein related family member (pmp-5) [Caenorhabditis elegans] gb|AAX88812.1| Peroxisomal membrane protein related protein 5, isoform c [Caenorhabditis elegans] 0.0
blast NP_001024133 Seven TM Receptor family member (str-180) [Caenorhabditis elegans] gb|AAX22283.1| Seven tm receptor protein 180, isoform b [Caenorhabditis elegans] 1.0E-179
blast NP_001024132 Seven TM Receptor family member (str-180) [Caenorhabditis elegans] gb|AAC19239.4| Seven tm receptor protein 180, isoform a [Caenorhabditis elegans] 1.0E-170
blast NP_001024133 Seven TM Receptor family member (str-180) [Caenorhabditis elegans] gb|AAX22283.1| Seven tm receptor protein 180, isoform b [Caenorhabditis elegans] 1.0E-170
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.4E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.4E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.4E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.8E-12
Pfam IPR003439 EMBL-EBI ABC transporter 5.3E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024133.1 7 10-32,45-64,91-113,133-155,202-224,253-275,285-307
NP_001024132.1 6 26-45,72-94,114-136,183-205,234-256,266-288
T10H9.6 6 26-45,72-94,114-136,183-205,234-256,266-288
SNAP00000019220 7 10-32,45-64,91-113,133-155,202-224,250-272,282-304
GENEFINDER00000019223 12 10-32,45-64,91-113,133-155,202-224,253-275,285-307,407-429,461-483,532-554,564-586,656-678
Sequence
Target Sequence 
>C. ELEGANS:191446_AT
aggttggaagttcgttgcctggtgctttattcccgccagctacggagcaatttggagtct
cacaatatttttcatttttcccgatgatgatggatttactgaactgataaggttagtaat
gtcggatattttggagacatttgactggaaaatggaggatattgtttatactggatttta
ttattttcgagaggacaaaaacggccttcacggttttgaaccacttcctatcgttggaat
gtgtattctctggagcatgatgacttcctcttcatttgttgtatacttttttggttatcg
atgctacaaacttgtgtctacaatgacgaaaaattcgttttcaagccttgcacaaggact
acagcatcaattattcaaagctttggtgtggcagacagtcattcctattttcatggtgta
tattcctagttctctaattctaatttgcccactttttaatataaatcttggccgtatcag
cgtcgttatcactgtcactatgtcaatttttactgcactcgatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTTGGAAGTTCGTTGCCTGGTGC 597 57 399 Antisense
TTATTCCCGCCAGCTACGGAGCAAT 529 677 425 Antisense
TTTTGAACCACTTCCTATCGTTGGA 175 675 612 Antisense
TCTGGAGCATGATGACTTCCTCTTC 406 607 647 Antisense
GACTTCCTCTTCATTTGTTGTATAC 282 371 660 Antisense
AAAATTCGTTTTCAAGCCTTGCACA 415 129 728 Antisense
CATGGTGTATATTCCTAGTTCTCTA 618 209 810 Antisense
GTTCTCTAATTCTAATTTGCCCACT 144 443 827 Antisense
TAAATCTTGGCCGTATCAGCGTCGT 648 639 860 Antisense
TCAGCGTCGTTATCACTGTCACTAT 414 625 875 Antisense
GTCAATTTTTACTGCACTCGATCCA 244 463 900 Antisense
Sequence Source Affymetrix Proprietary Database