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[191445_at] UDP-glucoronosyltransferase

Description F01D4.2 /REP_DB=WormBase Gene ID /WP=CE09154 /TR=O17757 /GB=CAB02884.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucoronosyltransferase
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 54      6grp_total > 62      4grp_total > 62      6grp_highest_sub > 03      6grp_cgc > 75      6grp_high1_sub > 03      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 835
1 2 3 4 range
A 790.7
(3)
P 		228.1
(-2.5)
P 		505.1
(0.2)
P 		182.4
(-3)
P 		608
B 960.5
(3)
P 		363.9
(-1.3)
P 		602.2
(0.4)
P 		125.3
(-3)
P 		835
C 902
(3)
P 		352.5
(-1.5)
P 		530.4
(-0)
P 		168
(-3)
P 		734
avr 884.4
(3) 		314.8
(-1.7) 		545.9
(0.2) 		158.6
(-3) 		726

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1429
1 2 3 4 5 6 range
A 702.1
(-3)
P 		1360.5
(0.2)
P 		1942.8
(3)
P 		1347.5
(0.1)
P 		1427.9
(0.5)
P 		908.1
(-2)
P 		1241
B 990.3
(-3)
P 		1380.5
(-0.9)
P 		2131.3
(3)
P 		1691.2
(0.7)
P 		1409.4
(-0.8)
P 		1026.8
(-2.8)
P 		1141
C 795
(-3)
P 		1555.6
(1.1)
P 		1544.4
(1)
P 		1917
(3)
P 		1127.2
(-1.2)
P 		1163.3
(-1)
P 		1122
avr 829.1
(-3) 		1432.2
(0.5) 		1872.8
(3) 		1651.9
(1.7) 		1321.5
(-0.2) 		1032.7
(-1.8) 		1044
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 287.9
(3)
P 		49.5
(-2.5)
P 		132.1
(-0.6)
P 		26.7
(-3)
P 		261
B 306.3
(3)
P 		89.9
(-1.6)
P 		139.5
(-0.6)
P 		26.7
(-3)
P 		280
C 298.6
(3)
P 		101.4
(-1.4)
P 		184.9
(0.5)
P 		28.3
(-3)
P 		270
avr 297.6
(3) 		80.3
(-1.8) 		152.2
(-0.2) 		27.2
(-3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 443
1 2 3 4 5 6 range
A 129.4
(-3)
P 		483.9
(3)
P 		423.1
(2)
P 		341.8
(0.6)
P 		430.9
(2.1)
P 		221.1
(-1.4)
P 		355
B 344.6
(-3)
P 		459.5
(0)
P 		517.5
(1.6)
P 		447.9
(-0.3)
P 		572.6
(3)
P 		382.9
(-2)
P 		228
C 294.7
(-3)
P 		474.7
(3)
P 		393.1
(0.3)
P 		385.5
(0)
P 		364.8
(-0.7)
P 		389.4
(0.2)
P 		180
avr 256.2
(-3) 		472.7
(3) 		444.6
(2.2) 		391.7
(0.8) 		456.1
(2.5) 		331.1
(-0.9) 		217
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191445_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10280
Sequence Type Exemplar sequence
Representative Public ID F01D4.2 NCBI
Target Description F01D4.2 /REP_DB=WormBase Gene ID /WP=CE09154 /TR=O17757 /GB=CAB02884.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucoronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069532(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069532 NCBI Caenorhabditis elegans F01D4.2 (UDP-glucoronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000032303 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10469780:10471747:1 11/11 None
GENEFINDER00000032313 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10469780:10471747:1 11/11 None
F01D4.2 ENSEMBL cdna:known chromosome:CEL140:IV:10469736:10471862:1 gene:F01D4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10469785-10471753(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucoronosyltransferase
Gene Symbol ugt-44
Ensembl F01D4.2
Entrez Gene 177939 Entrez gene
SwissProt O17757 EMBL-EBI
WormBase CE09154 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02884 Hypothetical protein F01D4.2 [Caenorhabditis elegans] ref|NP_501933.1| F01D4.2 [Caenorhabditis elegans] 0.0
blast CAE63835 Hypothetical protein CBG08389 [Caenorhabditis briggsae] 0.0
blast CAB02883 Hypothetical protein F01D4.1 [Caenorhabditis elegans] ref|NP_501932.2| F01D4.1 [Caenorhabditis elegans] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 7.6E-13
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.1E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501933.1 1 499-521
F01D4.2 1 499-521
SNAP00000032303 1 499-521
GENEFINDER00000032313 1 499-521
Sequence
Target Sequence 
>C. ELEGANS:191445_AT
tgcctgacaccacttttatctggaaatacgagaacacaactgtcgatattgtgaaacagt
ataataaacgaatcaataatgtgatgcttactgattggatgccacaaactgcacttctag
ccgacccaagattgactctttttgttactcatggtggattgggaagtacaaatgaagttg
cattcagtggaaaaccatcgataatggttccagtttttggtgatcaaacgagaaacgcaa
gaatgttggagagacatgaagttgcattggttctcacgaaatacgatctcactaacttta
aaaaagtcagaggaactatcagaaaaatgctgaacgataagagctattccatgaaagctg
agaaattggcgcaaatgttgagaaatcagccagagtcaccaaaggagatatttatcaaat
atttcaactttgttgctagatttggaaaaccacatggacttgattcatatgcagctgaaa
tgagcttcatcgagttctactatatcgattttatggcaatcctttcaattttctcggttg
ctttgtacatgatcgtttcgaaggttctaagagcatcccataac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCTGACACCACTTTTATCTGGAA 631 583 1019 Antisense
GATGCTTACTGATTGGATGCCACAA 531 411 1101 Antisense
ACTTCTAGCCGACCCAAGATTGACT 385 99 1131 Antisense
GACATGAAGTTGCATTGGTTCTCAC 665 363 1271 Antisense
GGTTCTCACGAAATACGATCTCACT 348 507 1287 Antisense
GAGAAATCAGCCAGAGTCACCAAAG 399 393 1398 Antisense
CATGGACTTGATTCATATGCAGCTG 473 209 1471 Antisense
TATGGCAATCCTTTCAATTTTCTCG 423 655 1530 Antisense
AATTTTCTCGGTTGCTTTGTACATG 576 173 1545 Antisense
GTTGCTTTGTACATGATCGTTTCGA 602 439 1555 Antisense
GAAGGTTCTAAGAGCATCCCATAAC 81 335 1578 Antisense
Sequence Source Affymetrix Proprietary Database