[Home] | [Total List]

[191444_at] 7TM chemoreceptor, str family

Description F58G4.5 /REP_DB=WormBase Gene ID /WP=CE25027 /GEN=str-129 /TR=Q9GS11 /GB=AAG24137.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 93      4grp_total > 10      6grp_cgc > 99      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 27.3
(-2.8)
A 		36.9
(-2.2)
A 		24.7
(-3)
A 		120.7
(3)
P 		96
B 25.2
(-2.3)
A 		33.8
(-1.8)
A 		10.6
(-3)
A 		128.7
(3)
P 		118
C 24.7
(-2.8)
A 		24.9
(-2.8)
A 		22
(-3)
A 		107.9
(3)
P 		86
avr 25.7
(-2.6) 		31.9
(-2.2) 		19.1
(-3) 		119.1
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 30.2
(0.2)
A 		5.2
(-3)
A 		52.1
(3)
A 		14.1
(-1.9)
A 		50
(2.7)
A 		31.8
(0.4)
A 		47
B 46.8
(3)
A 		30.2
(0.2)
A 		11.5
(-3)
A 		25.3
(-0.7)
A 		38.4
(1.6)
A 		21.1
(-1.4)
A 		35
C 8.2
(-3)
A 		75.3
(3)
A 		38.8
(-0.3)
A 		34.5
(-0.6)
A 		38.1
(-0.3)
A 		32.8
(-0.8)
A 		67
avr 28.4
(-1.7) 		36.9
(1.2) 		34.1
(0.2) 		24.6
(-3) 		42.2
(3) 		28.6
(-1.6) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 9.9
(-1.2)
A 		8
(-2.2)
A 		6.5
(-3)
A 		17.7
(3)
P 		11
B 8
(-1.7)
A 		8.4
(-1.6)
A 		2.4
(-3)
A 		27.4
(3)
P 		25
C 8.2
(-2.4)
A 		7.1
(-3)
A 		7.7
(-2.7)
A 		18.2
(3)
P 		11
avr 8.7
(-1.8) 		7.8
(-2.1) 		5.5
(-3) 		21.1
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 5.6
(-1.3)
A 		1.9
(-3)
A 		11.3
(1.3)
A 		3.6
(-2.2)
A 		15.1
(3)
A 		7.7
(-0.4)
A 		13
B 16.3
(3)
A 		10
(0.2)
A 		2.8
(-3)
A 		6.7
(-1.3)
A 		15.6
(2.7)
A 		7.9
(-0.7)
A 		14
C 3
(-3)
A 		23
(3)
A 		9.9
(-0.9)
A 		6.9
(-1.8)
A 		12.3
(-0.2)
A 		11
(-0.6)
A 		20
avr 8.3
(-1.2) 		11.6
(1.1) 		8
(-1.4) 		5.7
(-3) 		14.3
(3) 		8.9
(-0.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191444_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12142
Sequence Type Exemplar sequence
Representative Public ID F58G4.5 NCBI
Target Description F58G4.5 /REP_DB=WormBase Gene ID /WP=CE25027 /GEN=str-129 /TR=Q9GS11 /GB=AAG24137.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072687 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-129) (str-129) mRNA, complete cds. 11/11 None
GENEFINDER00000010861 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8093564:8095076:-1 11/11 None
F58G4.5 ENSEMBL cdna:known chromosome:CEL140:V:8093564:8095076:-1 gene:F58G4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010853 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8093564-8095077(-) 97.52 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-129
Ensembl F58G4.5
Entrez Gene 192004 Entrez gene
SwissProt Q9GS11 EMBL-EBI
WormBase CE25027 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24137 Seven tm receptor protein 129 [Caenorhabditis elegans] ref|NP_505088.1| Seven TM Receptor family member (str-129) [Caenorhabditis elegans] 0.0
blast T30004 hypothetical protein F58G4.5 - Caenorhabditis elegans 1.0E-175
blast CAE66137 Hypothetical protein CBG11365 [Caenorhabditis briggsae] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505088.1 7 10-29,42-64,88-110,130-152,200-222,248-270,280-302
F58G4.5 7 10-29,42-64,88-110,130-152,200-222,248-270,280-302
GENEFINDER00000010861 7 10-29,42-64,88-110,130-152,200-222,248-270,280-302
Sequence
Target Sequence 
>C. ELEGANS:191444_AT
ttatacctcctacaattcttttcattgtttggactttgtcaatttatttcaattttggac
caaatcaaattaaaaaggatttctttcgaaatataaccatgcagttgtatgacgaagata
ttgacaaaatatctttcatgggtccattgtattttacccgtaacgaagatggaagttgtc
tttttcggttttctgatttactgggagctactattagctgcgtcataatgacaatctgtc
tgatgacttgtgtaatttgtgcctacaaaacttataagaaattgaatgatttgacaatac
aaatgagtgaaagaacaagacatatgaacaagcaactattttggactctcgggctccaaa
cgattctaccctgtgttacacaatatattcctgtcggcgcaatgttttttcttccatttt
ttgaaattcattttggtaggattggaaacgtcgttggagcagcttgtagtctctaccctg
ccattgatccaattatcgcgattttcatgattgacaaattccgaaactacgttttgggaa
aagaagctcggactgcaccaaagact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATACCTCCTACAATTCTTTTCAT 71 681 413 Antisense
GGTTTTCTGATTTACTGGGAGCTAC 160 507 599 Antisense
GGGAGCTACTATTAGCTGCGTCATA 323 495 615 Antisense
AAGCAACTATTTTGGACTCTCGGGC 486 149 742 Antisense
TCTCGGGCTCCAAACGATTCTACCC 627 609 759 Antisense
ACGATTCTACCCTGTGTTACACAAT 215 93 772 Antisense
AATATATTCCTGTCGGCGCAATGTT 681 173 794 Antisense
GGAAACGTCGTTGGAGCAGCTTGTA 368 527 856 Antisense
TGGAGCAGCTTGTAGTCTCTACCCT 334 549 867 Antisense
TCTACCCTGCCATTGATCCAATTAT 156 615 884 Antisense
AGAAGCTCGGACTGCACCAAAGACT 45 75 954 Antisense
Sequence Source Affymetrix Proprietary Database