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[191443_at] Transthyretin-like family

Description Y51A2D.10 /REP_DB=WormBase Gene ID /WP=CE19206 /TR=Q9XXQ6 /GB=CAA16408.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 98      6grp_total > 85      4grp_total > 11      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 697
1 2 3 4 range
A 320.3
(-2.1)
P 		298.1
(-2.3)
P 		231.7
(-3)
P 		812.2
(3)
P 		581
B 290.9
(-2.6)
P 		359.7
(-2)
P 		243.9
(-3)
P 		928.3
(3)
P 		684
C 341.4
(-2.1)
P 		377.3
(-1.7)
P 		261.7
(-3)
P 		778.1
(3)
P 		516
avr 317.5
(-2.3) 		345
(-2) 		245.8
(-3) 		839.5
(3) 		594

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1416
1 2 3 4 5 6 range
A 527.8
(-2.3)
P 		378.3
(-3)
P 		1239.6
(0.8)
P 		1735.6
(3)
P 		1207.7
(0.7)
P 		1536.6
(2.1)
P 		1357
B 529.7
(-2.9)
P 		507.3
(-3)
P 		1395.6
(2)
P 		1291.6
(1.4)
P 		1505.2
(2.6)
P 		1571.9
(3)
P 		1065
C 615.7
(-2.5)
P 		503.8
(-3)
P 		747.1
(-1.9)
P 		1510.4
(1.7)
P 		1695.6
(2.5)
P 		1794.6
(3)
P 		1291
avr 557.7
(-2.5) 		463.1
(-3) 		1127.4
(0.4) 		1512.5
(2.4) 		1469.5
(2.2) 		1634.4
(3) 		1171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 116.6
(2.8)
P 		64.7
(-2.6)
P 		60.6
(-3)
P 		118.9
(3)
P 		58
B 92.8
(-1.5)
P 		88.8
(-1.6)
P 		56.5
(-3)
P 		197.8
(3)
P 		141
C 113
(0.3)
P 		108.5
(-0.4)
P 		91.2
(-3)
P 		131.2
(3)
P 		40
avr 107.5
(-0.1) 		87.3
(-1.7) 		69.4
(-3) 		149.3
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 514
1 2 3 4 5 6 range
A 97.3
(-3)
P 		134.5
(-2.3)
P 		270
(0)
P 		440.2
(3)
P 		364.4
(1.7)
P 		374.1
(1.8)
P 		343
B 184.3
(-2.8)
P 		168.9
(-3)
P 		338.9
(-0.7)
P 		342.1
(-0.7)
P 		611.6
(3)
P 		586.2
(2.7)
P 		443
C 228.2
(-2)
P 		153.7
(-3)
P 		190.1
(-2.5)
P 		303.7
(-1)
P 		548.7
(2.3)
P 		600.7
(3)
P 		447
avr 169.9
(-2.7) 		152.4
(-3) 		266.3
(-1.1) 		362
(0.4) 		508.2
(2.8) 		520.3
(3) 		368
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191443_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12781
Sequence Type Exemplar sequence
Representative Public ID Y51A2D.10 NCBI
Target Description Y51A2D.10 /REP_DB=WormBase Gene ID /WP=CE19206 /TR=Q9XXQ6 /GB=CAA16408.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075228(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075228 NCBI Caenorhabditis elegans Y51A2D.10 (Y51A2D.10) mRNA, complete cds. 11/11 None
GENEFINDER00000034266 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18559363:18560596:1 11/11 None
Y51A2D.10.2 ENSEMBL cdna:known chromosome:CEL140:V:18559324:18560696:1 gene:Y51A2D.10 11/11 None
Y51A2D.10.3 ENSEMBL cdna:known chromosome:CEL140:V:18559324:18560697:1 gene:Y51A2D.10 11/11 None
Y51A2D.10.1 ENSEMBL cdna:known chromosome:CEL140:V:18559324:18560697:1 gene:Y51A2D.10 11/11 None
Y51A2D.10.4 ENSEMBL cdna:known chromosome:CEL140:V:18559324:18560697:1 gene:Y51A2D.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18559362-18560596(+) 100.0 100.0
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl Y51A2D.10
Entrez Gene 180210 Entrez gene
SwissProt Q9XXQ6 EMBL-EBI
WormBase CE19206 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16408 Hypothetical protein Y51A2D.10 [Caenorhabditis elegans] ref|NP_507629.1| Y51A2D.10 [Caenorhabditis elegans] 6.0E-70
blast CAE67417 Hypothetical protein CBG12905 [Caenorhabditis briggsae] 9.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 6.0E-48
Sequence
Target Sequence 
>C. ELEGANS:191443_AT
tcacgggctcggcggaattgttggtagaaagcagacggttactgtagttggtaagctcac
ttgcaacggccaagctgtgaaggatgtgaagatcaagctgtatgaggatggaactgtcta
tgacaccaagatggacgttacaaacacattggcagacggaaccttcaaagtagtcggcgg
ccagaataaaattcgcaagatcgacccaaaaatcaatatttatcacagatgcaaccacgt
cggactttgcccgaaaagggttaccattcatgttccgaagaacgcagttggcaaaggatc
caaagaagctcaactttttgacattggagttctgaatttggcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACGGGCTCGGCGGAATTGTTGGT 167 603 57 Antisense
ACTGTAGTTGGTAAGCTCACTTGCA 266 97 97 Antisense
CTCACTTGCAACGGCCAAGCTGTGA 623 227 112 Antisense
TGAGGATGGAACTGTCTATGACACC 59 567 159 Antisense
AACACATTGGCAGACGGAACCTTCA 494 133 199 Antisense
GAACCTTCAAAGTAGTCGGCGGCCA 483 343 215 Antisense
TATCACAGATGCAACCACGTCGGAC 341 659 277 Antisense
AGATGCAACCACGTCGGACTTTGCC 469 65 283 Antisense
AAGGGTTACCATTCATGTTCCGAAG 603 159 312 Antisense
TGTTCCGAAGAACGCAGTTGGCAAA 606 561 327 Antisense
GACATTGGAGTTCTGAATTTGGCCA 566 369 376 Antisense
Sequence Source Affymetrix Proprietary Database