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[191442_at] sodium/phosphate transporter

Description M117.1 /REP_DB=WormBase Gene ID /WP=CE06199 /TR=Q21538 /GB=CAA98134.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 47      4grp_high_8_8 > 03      6grp_highest_nonorm > 10      6grp_total > 27      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2963
1 2 3 4 range
A 2744.5
(0.7)
P 		1259.5
(-2.8)
P 		1182
(-3)
P 		3746.3
(3)
P 		2564
B 2621.6
(-0.3)
P 		1471.3
(-2.7)
P 		1349.4
(-3)
P 		4144.8
(3)
P 		2795
C 2704.7
(0.6)
P 		1660.2
(-2.2)
P 		1344.5
(-3)
P 		3590.8
(3)
P 		2246
avr 2690.3
(0.3) 		1463.7
(-2.6) 		1292
(-3) 		3827.3
(3) 		2535

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1427
1 2 3 4 5 6 range
A 2090.4
(3)
P 		1512.7
(-0.1)
P 		1128.6
(-2.2)
P 		989.9
(-3)
P 		1138.6
(-2.2)
P 		1378.2
(-0.9)
P 		1101
B 2179.7
(3)
P 		1500.1
(-0.3)
P 		1052.7
(-2.5)
P 		939.9
(-3)
P 		1052.8
(-2.5)
P 		1334
(-1.1)
P 		1240
C 2131.9
(3)
P 		1571
(0.6)
P 		1377.3
(-0.3)
P 		1066.1
(-1.6)
P 		752.6
(-3)
P 		1387.4
(-0.2)
P 		1379
avr 2134
(3) 		1527.9
(-0.2) 		1186.2
(-1.9) 		998.6
(-2.9) 		981.3
(-3) 		1366.5
(-1) 		1153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 726
1 2 3 4 range
A 999.3
(3)
P 		273.4
(-3)
P 		309
(-2.7)
P 		548.4
(-0.7)
P 		726
B 836
(2.5)
P 		363.4
(-2.5)
P 		312.7
(-3)
P 		883.3
(3)
P 		571
C 895.3
(3)
P 		477.3
(-2.9)
P 		468.6
(-3)
P 		605.5
(-1.1)
P 		427
avr 910.2
(3) 		371.4
(-2.9) 		363.4
(-3) 		679.1
(0.5) 		547

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 576
1 2 3 4 5 6 range
A 385.3
(-0.1)
P 		538
(3)
P 		245.8
(-3)
P 		251.1
(-2.9)
P 		343.6
(-1)
P 		335.5
(-1.2)
P 		292
B 758.4
(3)
P 		499.3
(-0.1)
P 		255.6
(-2.9)
P 		249
(-3)
P 		427.7
(-0.9)
P 		497.4
(-0.1)
P 		509
C 790.2
(3)
P 		479.4
(-0.2)
P 		350.6
(-1.6)
P 		214.4
(-3)
P 		243.5
(-2.7)
P 		464.4
(-0.4)
P 		576
avr 644.6
(3) 		505.6
(0.9) 		284
(-2.3) 		238.2
(-3) 		338.3
(-1.5) 		432.4
(-0.1) 		406
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191442_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10090
Sequence Type Exemplar sequence
Representative Public ID M117.1 NCBI
Target Description M117.1 /REP_DB=WormBase Gene ID /WP=CE06199 /TR=Q21538 /GB=CAA98134.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069833 NCBI Caenorhabditis elegans M117.1 (M117.1) mRNA, complete cds. 11/11 None
SNAP00000015383 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11817587:11819406:1 11/11 None
GENEFINDER00000015390 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11814309:11820131:1 11/11 None
M117.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:11814215:11819431:1 gene:M117.1 11/11 None
M117.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:11814217:11819431:1 gene:M117.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11814314-11819412(+) 99.64 100.0
Public Domain and Genome References
Gene Title sodium/phosphate transporter
Ensembl M117.1
Entrez Gene 178112 Entrez gene
SwissProt Q21538 EMBL-EBI
WormBase CE32910 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98134 Hypothetical protein M117.1 [Caenorhabditis elegans] ref|NP_502234.2| M117.1 [Caenorhabditis elegans] 0.0
blast CAE62129 Hypothetical protein CBG06173 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502234.2 12 78-100,131-150,157-179,184-206,219-241,246-268,309-331,346-365,378-400,405-424,437-459,474-496
M117.1.2 12 78-100,131-150,157-179,184-206,219-241,246-268,309-331,346-365,378-400,405-424,437-459,474-496
M117.1.1 12 78-100,131-150,157-179,184-206,219-241,246-268,309-331,346-365,378-400,405-424,437-459,474-496
SNAP00000015383 11 20-39,46-68,73-95,108-130,135-157,198-220,235-254,267-289,294-313,326-348,363-385
GENEFINDER00000015390 12 78-100,131-150,157-179,184-206,219-241,246-268,309-331,346-365,378-400,405-424,437-459,474-496
Sequence
Target Sequence 
>C. ELEGANS:191442_AT
gtgttcgagtattcgccggtatcgcgtccgatcgtattcgtacactgccggaaaagtcaa
agttgcggttattcaacacgatctcattgcaagtacccgcgttttttctcatgctcgtag
tcttgctgccacgcgagcatccatatctacacgtcatctgcatcactttctatcaggctt
cattcgggttcaattgtggaggattctataagggcgccgctttgatatcaagacaattct
cttactttgtcatcgggtatattcaattgttcaaatcgttagcaacactgctcgaacctg
ttcttttttctcttcttgtgcttccgggaagtgaagattctgaactctcatggaccagct
acttcctgatccatgctttaacacttacagtagccaacacagtctatgttctcctagctc
gttcagaaccagccgactttgtgttgaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTCGAGTATTCGCCGGTATCGC 434 483 1169 Antisense
GCGTCCGATCGTATTCGTACACTGC 89 291 1192 Antisense
CACGATCTCATTGCAAGTACCCGCG 662 195 1245 Antisense
TTTTCTCATGCTCGTAGTCTTGCTG 259 677 1272 Antisense
TCCATATCTACACGTCATCTGCATC 248 591 1308 Antisense
TGCATCACTTTCTATCAGGCTTCAT 434 579 1327 Antisense
TTCTCTTCTTGTGCTTCCGGGAAGT 682 689 1476 Antisense
TCTCATGGACCAGCTACTTCCTGAT 489 613 1514 Antisense
ACTTCCTGATCCATGCTTTAACACT 182 103 1529 Antisense
GCCAACACAGTCTATGTTCTCCTAG 194 279 1561 Antisense
GAACCAGCCGACTTTGTGTTGAACG 692 345 1594 Antisense
Sequence Source Affymetrix Proprietary Database