[Home] | [Total List]

[191441_s_at] Zinc-binding dehydrogenases

Description W09H1.5 /REP_DB=WormBase Gene ID /WP=CE16575 /TR=O45903 /GB=CAB04958.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc-binding dehydrogenases
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 74      6grp_total > 70      4grp_total > 42      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 671.9
(-3)
P 		881.6
(3)
P 		793.6
(0.5)
P 		750.6
(-0.7)
P 		210
B 763.7
(-3)
P 		966
(3)
P 		933.4
(2)
P 		851.5
(-0.4)
P 		202
C 800.3
(-3)
P 		954
(3)
P 		893.9
(0.7)
P 		804.7
(-2.8)
P 		154
avr 745.3
(-3) 		933.9
(3) 		873.6
(1.1) 		802.3
(-1.2) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 371
1 2 3 4 5 6 range
A 791.1
(0.1)
P 		653.5
(-2.4)
P 		775.5
(-0.2)
P 		959
(3)
P 		617.3
(-3)
P 		620.1
(-3)
P 		342
B 706.6
(-0.2)
P 		780.4
(1.7)
P 		746.5
(0.8)
P 		834.3
(3)
P 		593.7
(-3)
P 		682.1
(-0.8)
P 		241
C 664.3
(-1.6)
P 		775.9
(0.4)
P 		588.2
(-3)
P 		924.1
(3)
P 		718
(-0.7)
P 		712.4
(-0.8)
P 		336
avr 720.7
(-1.2) 		736.6
(-0.9) 		703.4
(-1.6) 		905.8
(3) 		643
(-3) 		671.5
(-2.3) 		263
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 244.6
(3)
P 		191.4
(0.6)
P 		207.5
(1.3)
P 		109.9
(-3)
P 		135
B 243.5
(3)
P 		238.6
(2.5)
P 		216.3
(0.4)
P 		181.5
(-3)
P 		62
C 264.9
(1.4)
P 		274.3
(1.7)
P 		311.5
(3)
P 		135.7
(-3)
P 		176
avr 251
(3) 		234.8
(2.1) 		245.1
(2.7) 		142.4
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 145.8
(-3)
P 		232.4
(2.3)
P 		168.9
(-1.6)
P 		243.2
(3)
P 		186.3
(-0.5)
P 		151
(-2.7)
P 		97
B 245.9
(1.9)
P 		259.8
(3)
P 		181.3
(-3)
P 		221
(0)
P 		241.2
(1.6)
P 		254.3
(2.6)
P 		79
C 246.2
(3)
P 		236.7
(2.4)
P 		149.7
(-3)
P 		185.8
(-0.8)
P 		232.3
(2.1)
P 		238.5
(2.5)
P 		97
avr 212.6
(0.6) 		243
(3) 		166.6
(-3) 		216.7
(0.9) 		219.9
(1.2) 		214.6
(0.8) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191441_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3791
Sequence Type Exemplar sequence
Representative Public ID W09H1.5 NCBI
Target Description W09H1.5 /REP_DB=WormBase Gene ID /WP=CE16575 /TR=O45903 /GB=CAB04958.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc-binding dehydrogenases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064399 NCBI Caenorhabditis elegans W09H1.5 (W09H1.5) mRNA, complete cds. 11/11 None
SNAP00000010989 ENSEMBL cdna:SNAP chromosome:CEL140:II:13185974:13186564:-1 9/11 None
GENEFINDER00000010993 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13185974:13187169:-1 11/11 None
W09H1.5 ENSEMBL cdna:known chromosome:CEL140:II:13185910:13187230:-1 gene:W09H1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13185970-13187166(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc-binding dehydrogenases
Ensembl W09H1.5
Entrez Gene 174963 Entrez gene
SwissProt O45903 EMBL-EBI
WormBase CE16575 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252542_AT oxidoreductase, zinc-binding dehydrogenase family protein at
CANINE_2:CFA.2548.1.A1_AT similar to Trans-2-enoyl-CoA reductase, mitochondrial precursor (HsNrbf-1) (NRBF-1) cfa
CANINE_2:CFA.2548.1.A1_S_AT similar to Trans-2-enoyl-CoA reductase, mitochondrial precursor (HsNrbf-1) (NRBF-1) cfa
CANINE_2:CFAAFFX.18110.1.S1_AT similar to Trans-2-enoyl-CoA reductase, mitochondrial precursor (HsNrbf-1) (NRBF-1) cfa
DROSOPHILA_2:1632316_AT dm
DROSGENOME1:147176_AT dm
CHICKEN:GGA.7176.1.S1_AT similar to 2-enoyl thioester reductase gga
HG-U133_PLUS_2:218664_AT mitochondrial trans-2-enoyl-CoA reductase hs
HG-U133A:218664_AT mitochondrial trans-2-enoyl-CoA reductase hs
HG-U133A_2:218664_AT mitochondrial trans-2-enoyl-CoA reductase hs
HU35KSUBA:RC_AA449215_AT mitochondrial trans-2-enoyl-CoA reductase hs
HU35KSUBD:RC_R47992_S_AT mitochondrial trans-2-enoyl-CoA reductase hs
U133_X3P:G7705776_3P_AT mitochondrial trans-2-enoyl-CoA reductase hs
HG-U95B:49341_AT mitochondrial trans-2-enoyl-CoA reductase hs
HG-U95B:48128_AT Mitochondrial trans-2-enoyl-CoA reductase hs
HG-U95E:69116_AT Mitochondrial trans-2-enoyl-CoA reductase hs
HU35KSUBB:RC_F04219_AT Mitochondrial trans-2-enoyl-CoA reductase hs
MU11KSUBA:AA241313_S_AT mitochondrial trans-2-enoyl-CoA reductase mm
MG-U74AV2:160798_AT mitochondrial trans-2-enoyl-CoA reductase mm
MG-U74BV2:164967_F_AT mitochondrial trans-2-enoyl-CoA reductase mm
MOE430A:1417098_S_AT mitochondrial trans-2-enoyl-CoA reductase mm
MOUSE430A_2:1417098_S_AT mitochondrial trans-2-enoyl-CoA reductase mm
MOUSE430_2:1417098_S_AT mitochondrial trans-2-enoyl-CoA reductase mm
MOE430A:1417097_AT mitochondrial trans-2-enoyl-CoA reductase mm
MOUSE430A_2:1417097_AT mitochondrial trans-2-enoyl-CoA reductase mm
MOUSE430_2:1417097_AT mitochondrial trans-2-enoyl-CoA reductase mm
MOE430B:1440553_AT mitochondrial trans-2-enoyl-CoA reductase mm
MOUSE430_2:1440553_AT mitochondrial trans-2-enoyl-CoA reductase mm
MU19KSUBC:TC40052_AT Nuclear receptor binding factor 1, mRNA (cDNA clone MGC:6611 IMAGE:3488760) mm
RG-U34A:AB015724_AT nuclear receptor binding factor 1 rn
RG-U34A:AB015724_G_AT nuclear receptor binding factor 1 rn
RAE230A:1398252_AT nuclear receptor binding factor 1 rn
RAT230_2:1398252_AT nuclear receptor binding factor 1 rn
YEAST_2:1775439_AT 2-enoyl thioester reductase, member of the medium chain dehydrogenase/reductase family; localized to in mitochondria, where it has a probable role in fatty acid synthesis Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4024 alcohol dehydrogenase activity, zinc-dependent inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04958 Hypothetical protein W09H1.5 [Caenorhabditis elegans] ref|NP_496800.1| W09H1.5 [Caenorhabditis elegans] sp|O45903|MECR1_CAEEL Probable trans-2-enoyl-CoA reductase 1, mitochondrial precursor 0.0
blast CAE59441 Hypothetical protein CBG02814 [Caenorhabditis briggsae] 1.0E-167
blast CAB04958 Hypothetical protein W09H1.5 [Caenorhabditis elegans] ref|NP_496800.1| W09H1.5 [Caenorhabditis elegans] sp|O45903|MECR1_CAEEL Probable trans-2-enoyl-CoA reductase 1, mitochondrial precursor 1.0E-109
blast CAE59440 Hypothetical protein CBG02813 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.8E-24
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 2.8E-61
Sequence
Target Sequence 
>C. ELEGANS:191441_S_AT
tgcaacattccaggtgaatcctcccacagcttatcgtatgcttaaagactttatcgacct
gaaaaaaggagacacagtggctcaaaacggagccaattcggctgtcgggaagcacgttat
tcaaatttgccggatccttggcatcaaaactgtgaatgttgtgagaagtcgcgataatct
ggaagaattggtgaaagagctgaaagatttgggcgccgacgaagttatcacacaggaaga
gttgtatagtcgaaagaagaaattcccaggagtcaagttagcattaaactgcgttggagg
cagaagctccctgtttttggcgagtctcctggaccacggaggatgtatggtgacctacgg
tggaatgagcaagcagcctgtcgattgtccaaccgggccactgatcttcaaggatatctc
gcttcgcggattctggatgtcaagatggtacgatattcagaaatccccggaaaagcggca
tgagatgtaccaggagcttgccggttggatgaagagtggagagatcaagaagcaggagat
tgtgaagaatcgattggaagatcatgcaaaagctctcgatactgcgctgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAACATTCCAGGTGAATCCTCCC 462 577 420 Antisense
CCTCCCACAGCTTATCGTATGCTTA 508 267 439 Antisense
AGCCAATTCGGCTGTCGGGAAGCAC 124 85 510 Antisense
GCCGGATCCTTGGCATCAAAACTGT 437 283 548 Antisense
TGGGCGCCGACGAAGTTATCACACA 627 553 629 Antisense
GAGTCTCCTGGACCACGGAGGATGT 471 399 741 Antisense
GAGCAAGCAGCCTGTCGATTGTCCA 331 391 786 Antisense
GATCTTCAAGGATATCTCGCTTCGC 142 419 822 Antisense
TCGCTTCGCGGATTCTGGATGTCAA 709 599 838 Antisense
TGTACCAGGAGCTTGCCGGTTGGAT 653 559 905 Antisense
CAAAAGCTCTCGATACTGCGCTGAG 296 191 986 Antisense
Sequence Source Affymetrix Proprietary Database