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[191440_at] UDP-glucuronosyltransferase

Description R04B5.9 /REP_DB=WormBase Gene ID /WP=CE06219 /TR=Q21706 /GB=CAA94845.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_high_8_8 > 45      6grp_highest_nonorm > 95      6grp_total > 95      4grp_total > 50      6grp_highest_sub > In      6grp_cgc > 78      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 372
1 2 3 4 range
A 198.5
(-1.2)
P 		461.2
(3)
P 		312.9
(0.6)
P 		88.8
(-3)
P 		372
B 176.3
(-1.6)
P 		399.6
(3)
P 		344.8
(1.9)
P 		108
(-3)
P 		292
C 171.7
(-1.6)
M 		415.3
(3)
P 		385.2
(2.4)
P 		95
(-3)
P 		320
avr 182.2
(-1.4) 		425.4
(3) 		347.6
(1.6) 		97.3
(-3) 		328

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 908
1 2 3 4 5 6 range
A 285.9
(-3)
P 		722.2
(0.8)
P 		553.7
(-0.7)
P 		808.6
(1.5)
P 		958.3
(2.8)
P 		980.4
(3)
P 		695
B 288.7
(-3)
P 		588.8
(-0.7)
P 		510.5
(-1.3)
P 		624.5
(-0.5)
P 		999.8
(2.3)
P 		1086.3
(3)
P 		798
C 270
(-3)
P 		645.3
(-0.5)
P 		613.6
(-0.7)
P 		745
(0.1)
P 		1104.3
(2.5)
P 		1177.5
(3)
P 		908
avr 281.5
(-3) 		652.1
(-0.2) 		559.3
(-0.9) 		726
(0.3) 		1020.8
(2.5) 		1081.4
(3) 		800
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 72.3
(1.1)
P 		100.1
(3)
P 		81.8
(1.7)
P 		13
(-3)
P 		87
B 56.2
(-0.4)
P 		98.7
(3)
P 		79.9
(1.5)
P 		23
(-3)
P 		76
C 56.8
(-0.9)
M 		119.4
(2.2)
P 		134.3
(3)
P 		16
(-3)
P 		118
avr 61.8
(0) 		106.1
(3) 		98.7
(2.5) 		17.3
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 52.7
(-3)
P 		256.8
(2.2)
P 		120.6
(-1.3)
P 		205.1
(0.9)
P 		289.2
(3)
P 		238.7
(1.7)
P 		237
B 100.5
(-3)
P 		196
(-1.1)
P 		124
(-2.5)
P 		165.4
(-1.7)
P 		406.2
(3)
P 		405.1
(3)
P 		306
C 100.1
(-3)
P 		196.9
(-1)
P 		156.2
(-1.9)
P 		149.8
(-2)
P 		357.3
(2.2)
P 		394.2
(3)
P 		294
avr 84.4
(-3) 		216.6
(-0) 		133.6
(-1.9) 		173.4
(-1) 		350.9
(3) 		346
(2.9) 		267
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191440_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11896
Sequence Type Exemplar sequence
Representative Public ID R04B5.9 NCBI
Target Description R04B5.9 /REP_DB=WormBase Gene ID /WP=CE06219 /TR=Q21706 /GB=CAA94845.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073194(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073194 NCBI Caenorhabditis elegans R04B5.9 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000020541 ENSEMBL cdna:SNAP chromosome:CEL140:V:10097895:10100821:-1 10/11 None
GENEFINDER00000020550 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10098913:10101786:-1 11/11 None
R04B5.9 ENSEMBL cdna:known chromosome:CEL140:V:10098911:10101175:-1 gene:R04B5.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10098912-10103818(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-47
Ensembl R04B5.9
Entrez Gene 187570 Entrez gene
SwissProt Q21706 EMBL-EBI
WormBase CE37984 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1641481_AT dm
DROSGENOME1:149663_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94845 Hypothetical protein R04B5.9 [Caenorhabditis elegans] ref|NP_505595.2| R04B5.9 [Caenorhabditis elegans] 0.0
blast CAE56922 Hypothetical protein CBG24767 [Caenorhabditis briggsae] 0.0
blast CAE70548 Hypothetical protein CBG17190 [Caenorhabditis briggsae] 1.0E-170
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.4E-38
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.3E-10
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.1E-13
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.7E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505595.2 2 7-29,503-525
R04B5.9 2 7-29,503-525
GENEFINDER00000020550 2 20-42,493-515
Sequence
Target Sequence 
>C. ELEGANS:191440_AT
gtctttgtttctgattggttgccgcaaccagcaattttacatcatccccgccttcgtact
tttattacacatgctggttacaatggtcttatggaagcagctcttgccggtgttccatta
attacgattccatttatgtttgatcagaatctaaacagtcgagcaatcgagaaaaaagga
tggggaattagaagagacaaaaaacaattcctcacggagccaaacgccattgaggaagct
ataagagaaatgctcacaaatccaagttatacgaaacaagcacatcgagtacgtgacttg
atgagaaacaaacccatgggagcaagagaccgatttataaaaacaactgagtgggttatt
cagaatggaggagttcatgaattgctgactgaaggaagagatctcagtatcatcaagtat
tacaatttagatatcattgttccatgtttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTTGTTTCTGATTGGTTGCCGC 479 467 1696 Antisense
CAACCAGCAATTTTACATCATCCCC 192 187 1720 Antisense
CCGCCTTCGTACTTTTATTACACAT 501 259 1743 Antisense
TTATGGAAGCAGCTCTTGCCGGTGT 528 681 1784 Antisense
GCCGGTGTTCCATTAATTACGATTC 435 283 1801 Antisense
AACAATTCCTCACGGAGCCAAACGC 622 133 1898 Antisense
GGAGCCAAACGCCATTGAGGAAGCT 609 521 1911 Antisense
AATGCTCACAAATCCAAGTTATACG 400 165 1944 Antisense
AAGCACATCGAGTACGTGACTTGAT 443 151 1973 Antisense
AACCCATGGGAGCAAGAGACCGATT 418 143 2006 Antisense
TAGATATCATTGTTCCATGTTTCTT 339 653 2123 Antisense
Sequence Source Affymetrix Proprietary Database