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[191438_at] 7TM chemoreceptor, str family

Description M01D1.1 /REP_DB=WormBase Gene ID /WP=CE21071 /GEN=str-148 /TR=O17230 /GB=AAB70997.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 47      4grp_total > 03      6grp_cgc > 27      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 57.4
(-2.2)
A 		26.9
(-3)
A 		38.2
(-2.7)
A 		269.6
(3)
P 		243
B 74.5
(-1.5)
M 		45.5
(-2.1)
A 		8.1
(-3)
A 		266.5
(3)
P 		258
C 83.3
(-1.8)
A 		49.9
(-2.5)
A 		24.7
(-3)
A 		320.1
(3)
P 		295
avr 71.7
(-1.9) 		40.8
(-2.6) 		23.7
(-3) 		285.4
(3) 		262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 84.4
(3)
P 		43.2
(-0.7)
A 		48.4
(-0.2)
P 		17.7
(-3)
A 		41.8
(-0.8)
M 		84.3
(3)
P 		67
B 55.1
(-0.5)
M 		71.1
(0.9)
A 		55.2
(-0.5)
P 		47.6
(-1.2)
A 		27.3
(-3)
A 		95.3
(3)
P 		68
C 72.1
(0.5)
P 		74.3
(0.7)
P 		35.6
(-2.9)
A 		88
(2)
A 		34.8
(-3)
P 		99.1
(3)
P 		64
avr 70.5
(0.7) 		62.9
(-0.1) 		46.4
(-1.8) 		51.1
(-1.3) 		34.6
(-3) 		92.9
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 20.9
(-0.3)
A 		5.8
(-3)
A 		10
(-2.3)
A 		39.5
(3)
P 		34
B 23.8
(-0.6)
M 		11.2
(-2)
A 		1.9
(-3)
A 		56.8
(3)
P 		55
C 27.6
(-0.5)
A 		14.4
(-2.2)
A 		8.6
(-3)
A 		54
(3)
P 		45
avr 24.1
(-0.6) 		10.5
(-2.5) 		6.8
(-3) 		50.1
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 15.6
(1.2)
P 		15.4
(1.1)
A 		10.5
(-0.8)
P 		4.5
(-3)
A 		12.6
(0)
M 		20.5
(3)
P 		16
B 19.2
(-1)
M 		23.7
(0.1)
A 		13.4
(-2.4)
P 		12.6
(-2.6)
A 		11.1
(-3)
A 		35.5
(3)
P 		24
C 26.7
(1.4)
P 		22.7
(0.4)
P 		9.1
(-3)
A 		17.7
(-0.9)
A 		11.3
(-2.5)
P 		33.2
(3)
P 		24
avr 20.5
(0) 		20.6
(0.1) 		11
(-3) 		11.6
(-2.8) 		11.7
(-2.8) 		29.7
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191438_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4864
Sequence Type Exemplar sequence
Representative Public ID M01D1.1 NCBI
Target Description M01D1.1 /REP_DB=WormBase Gene ID /WP=CE21071 /GEN=str-148 /TR=O17230 /GB=AAB70997.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061497(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061497 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-148) (str-148) mRNA, complete cds. 11/11 None
GENEFINDER00000029303 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1046511:1048307:1 11/11 None
M01D1.1 ENSEMBL cdna:known chromosome:CEL140:II:1046511:1048282:1 gene:M01D1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029291 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1046509-1048201(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-148
Ensembl M01D1.1
Entrez Gene 173486 Entrez gene
SwissProt O17230 EMBL-EBI
WormBase CE21071 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70997 Seven tm receptor protein 148 [Caenorhabditis elegans] ref|NP_493898.1| Seven TM Receptor family member (str-148) [Caenorhabditis elegans] 0.0
blast H88035 protein M01D1.1 [imported] - Caenorhabditis elegans 0.0
blast CAE62976 Hypothetical protein CBG07194 [Caenorhabditis briggsae] 1.0E-149
blast CAE62976 Hypothetical protein CBG07194 [Caenorhabditis briggsae] 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.0E-119
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.4E-111
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493898.1 7 5-27,40-62,82-104,125-147,200-222,243-265,275-297
M01D1.1 7 5-27,40-62,82-104,125-147,200-222,243-265,275-297
GENEFINDER00000029303 7 5-27,40-62,82-104,125-147,217-239,260-282,292-314
Sequence
Target Sequence 
>C. ELEGANS:191438_AT
taccatgcctagtatgctttgttttgtggtttgaatttgtttattggggaatgtcaaata
ctgttgagaaacagttgtacatgagagaagaaatagaagcttattacaatgaagattcta
cgaaagtctcgtttattgcaccgatgtactggtcggttggaacaaatggtgagaagattt
ggaagttttgggaaattatgtcttctgtggaatgtgtttgtataattgctgtttgttttt
caacaattttgttttgcgcatcaaatatttattttacaatgaaaagtgccagtggacata
tgagccgaaaaactttggaactaaatcgccaactgtttatcactcttacatttcaaacaa
ttctaccttttgtaatgatgtatagtcctgttggattattgatcgttttgccattattcg
aggtctacgttggaagcattgcgaattttgttggtgcaagtctagctgtctatccatcac
ttgaaccgttgattgcgatgttttgtattaaggaattcaggaaaactgttacatgtccct
cacttcgaaaggtgactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCATGCCTAGTATGCTTTGTTTT 301 649 407 Antisense
GAAAGTCTCGTTTATTGCACCGATG 693 359 528 Antisense
AGTGCCAGTGGACATATGAGCCGAA 590 59 691 Antisense
AATCGCCAACTGTTTATCACTCTTA 70 169 730 Antisense
ATTATTGATCGTTTTGCCATTATTC 674 13 801 Antisense
TCGAGGTCTACGTTGGAAGCATTGC 12 601 824 Antisense
GTTGGTGCAAGTCTAGCTGTCTATC 285 437 856 Antisense
GTCTATCCATCACTTGAACCGTTGA 609 469 874 Antisense
GAACCGTTGATTGCGATGTTTTGTA 147 347 889 Antisense
GAAAACTGTTACATGTCCCTCACTT 339 353 927 Antisense
GTCCCTCACTTCGAAAGGTGACTCC 591 473 941 Antisense
Sequence Source Affymetrix Proprietary Database