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[191435_s_at] transmembrane transporter

Description T01B11.7 /REP_DB=WormBase Gene ID /WP=CE12904 /TR=P91413 /GB=AAB38004.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=transmembrane transporter
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_high_8_8 > 51      6grp_highest_nonorm > 61      6grp_total > 22      4grp_total > 61      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > De      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 935
1 2 3 4 range
A 881.3
(3)
P 		776.3
(2.2)
P 		762
(2.1)
P 		107.1
(-3)
A 		774
B 801.3
(2.7)
P 		830.8
(3)
P 		764.3
(2.4)
P 		127.8
(-3)
P 		703
C 1042.2
(3)
P 		810.2
(1.5)
P 		809.6
(1.5)
P 		137
(-3)
P 		905
avr 908.3
(3) 		805.8
(2.2) 		778.6
(2) 		124
(-3) 		784

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 639
1 2 3 4 5 6 range
A 492.9
(0.6)
P 		744.8
(3)
P 		584
(1.4)
P 		405.1
(-0.3)
P 		210.4
(-2.2)
P 		123.5
(-3)
P 		621
B 520.1
(0.9)
P 		717.8
(3)
P 		576.6
(1.5)
P 		438.7
(0.1)
P 		208.8
(-2.3)
P 		139.5
(-3)
P 		578
C 569.7
(1.9)
P 		672.2
(3)
P 		542.6
(1.6)
P 		545.9
(1.7)
P 		234
(-1.6)
P 		105.8
(-3)
P 		566
avr 527.6
(1.1) 		711.6
(3) 		567.7
(1.5) 		463.2
(0.5) 		217.7
(-2) 		122.9
(-3) 		589
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 329
1 2 3 4 range
A 320.9
(3)
P 		168.5
(0)
P 		199.2
(0.6)
P 		15.7
(-3)
A 		305
B 255.5
(3)
P 		205.2
(1.7)
P 		177.1
(0.9)
P 		27.2
(-3)
P 		228
C 345
(3)
P 		232.9
(0.9)
P 		282.2
(1.8)
P 		23.1
(-3)
P 		322
avr 307.1
(3) 		202.2
(0.8) 		219.5
(1.2) 		22
(-3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 90.9
(-1.4)
P 		264.9
(3)
P 		127.2
(-0.5)
P 		102.7
(-1.1)
P 		63.5
(-2.1)
P 		30.1
(-3)
P 		235
B 181
(1.1)
P 		238.9
(3)
P 		140
(-0.2)
P 		116.2
(-0.9)
P 		84.8
(-1.9)
P 		52
(-3)
P 		187
C 211.2
(3)
P 		205.1
(2.8)
P 		138.1
(0.5)
P 		109.8
(-0.5)
P 		75.7
(-1.6)
P 		35.4
(-3)
P 		176
avr 161
(0.7) 		236.3
(3) 		135.1
(-0.1) 		109.6
(-0.9) 		74.7
(-1.9) 		39.2
(-3) 		197
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191435_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9491
Sequence Type Exemplar sequence
Representative Public ID T01B11.7 NCBI
Target Description T01B11.7 /REP_DB=WormBase Gene ID /WP=CE12904 /TR=P91413 /GB=AAB38004.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=transmembrane transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069041(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069041 NCBI Caenorhabditis elegans Organic Anion Transporter family member (oat-1) (oat-1) mRNA, complete cds. 11/11 A 
SNAP00000008420 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8464834:8472571:-1 11/11 None
GENEFINDER00000008427 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8471552:8472575:-1 11/11 None
T01B11.7.2 ENSEMBL cdna:known chromosome:CEL140:IV:8464742:8472575:-1 gene:T01B11.7 11/11 None
T01B11.7.1 ENSEMBL cdna:known chromosome:CEL140:IV:8464750:8472577:-1 gene:T01B11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8471553-8472577(-) 100.0 100.0
Public Domain and Genome References
Gene Title transmembrane transporter
Gene Symbol oat-1
Ensembl T01B11.7
Entrez Gene 177649 Entrez gene
SwissProt Q9NJF1 EMBL-EBI
WormBase CE30160 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB38003 Organic anion transporter protein 1 [Caenorhabditis elegans] ref|NP_501442.2| Organic Anion Transporter family member (oat-1) [Caenorhabditis elegans] gb|AAF73198.1| multispecific organic anion transporter [Caenorhabditis elegans] 0.0
blast CAE71545 Hypothetical protein CBG18488 [Caenorhabditis briggsae] 0.0
blast T25851 hypothetical protein T01B11.5 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 2.8E-9
Pfam IPR005828 EMBL-EBI General substrate transporter 1.6E-10
Pfam IPR005828 EMBL-EBI General substrate transporter 2.8E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501442.2 10 49-71,155-172,179-201,211-233,238-257,328-350,357-379,394-413,418-437,478-500
T01B11.7.2 10 49-71,155-172,179-201,211-233,238-257,328-350,357-379,394-413,418-437,478-500
T01B11.7.1 10 49-71,155-172,179-201,211-233,238-257,328-350,357-379,394-413,418-437,478-500
SNAP00000008420 10 49-71,155-172,179-201,211-233,238-257,328-350,357-379,394-413,418-437,478-500
GENEFINDER00000008427 4 51-73,157-174,181-203,213-235
Sequence
Target Sequence 
>C. ELEGANS:191435_S_AT
attactgctttcactgcgttagccagtgtcatggtgatggtatttgcaggagcaaaccca
acagttgtcggatgtgacaacaccgttgtaaacgggtgtcatgagtattattctctcaaa
aatcgttcgggatgtacaccagttcttgaatatcaatttgaatcagtacaagttgagttt
aattacatttgtgatgacgccaaaaaagtgaagaacacaatcacaattcaaacatttgga
gtattggttggtgctgctatatttggacaagtatctgacaatttcggaagaagaaaagct
ctaattatctcatgtattggaaatgcaattttcaatctgatatcttcctactcgccaagt
ttattctacttcatgctatggcgcactgtttcaggaattttcgcaggaggtcttactgta
gttcaaatggtgtacatggttgaaaatattcccagacatcatcgtatgtggattcagaac
tctattacctggtcacccaacttgataattttcccgtatattgcatacttggcacagaat
tggagaacactttcagttgttatttcagccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTACTGCTTTCACTGCGTTAGCCA 307 13 178 Antisense
GCAGGAGCAAACCCAACAGTTGTCG 654 309 223 Antisense
GTTCGGGATGTACACCAGTTCTTGA 177 443 302 Antisense
TTCAATCTGATATCTTCCTACTCGC 557 685 508 Antisense
TCCTACTCGCCAAGTTTATTCTACT 36 591 523 Antisense
ACTTCATGCTATGGCGCACTGTTTC 526 103 545 Antisense
AGGAATTTTCGCAGGAGGTCTTACT 228 39 570 Antisense
AAATATTCCCAGACATCATCGTATG 657 115 621 Antisense
TCAGAACTCTATTACCTGGTCACCC 480 621 651 Antisense
GTCACCCAACTTGATAATTTTCCCG 556 465 669 Antisense
CACTTTCAGTTGTTATTTCAGCCAC 201 197 725 Antisense
Sequence Source Affymetrix Proprietary Database