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[191434_at] UDP-glucuronosyltransferase

Description T25B9.7 /REP_DB=WormBase Gene ID /WP=CE06506 /TR=Q22770 /GB=CAA94378.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_high1_10_10 > 61      4grp_high_8_8 > 05      6grp_total > 61      4grp_total > 12      6grp_cgc > 84      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 418
1 2 3 4 range
A 308.9
(-0.8)
P 		193.2
(-2.5)
P 		158.7
(-3)
A 		567.5
(3)
P 		409
B 236.3
(-1.9)
P 		247.8
(-1.7)
P 		159.3
(-3)
A 		576.6
(3)
P 		417
C 236.5
(-2.3)
P 		224.8
(-2.5)
P 		199.9
(-3)
P 		513.2
(3)
P 		313
avr 260.6
(-1.6) 		221.9
(-2.2) 		172.6
(-3) 		552.4
(3) 		380

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 114.4
(-3)
A 		224.2
(1.1)
P 		275.1
(3)
P 		273.2
(2.9)
P 		176.5
(-0.7)
P 		217.8
(0.9)
P 		161
B 205.2
(0.6)
P 		235
(2.1)
P 		253.1
(3)
P 		252.8
(3)
P 		228
(1.7)
P 		134.3
(-3)
P 		119
C 191.9
(-2.1)
P 		224.5
(-0.6)
P 		186.4
(-2.4)
P 		303.1
(3)
P 		175.6
(-2.9)
P 		173.4
(-3)
P 		130
avr 170.5
(-3) 		227.9
(0.3) 		238.2
(0.8) 		276.4
(3) 		193.4
(-1.7) 		175.2
(-2.7) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 112.5
(3)
P 		41.9
(-3)
P 		41.5
(-3)
A 		83.1
(0.5)
P 		71
B 75.3
(-0.3)
P 		61.2
(-1.3)
P 		36.9
(-3)
A 		122.9
(3)
P 		86
C 78.3
(0.8)
P 		64.6
(-3)
P 		69.7
(-1.6)
P 		86.5
(3)
P 		22
avr 88.7
(1.9) 		55.9
(-2.2) 		49.4
(-3) 		97.5
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 21.1
(-3)
A 		79.7
(3)
P 		59.9
(1)
P 		69.3
(1.9)
P 		53.3
(0.3)
P 		53
(0.3)
P 		59
B 71.4
(0)
P 		78.2
(1)
P 		61.5
(-1.4)
P 		66.9
(-0.6)
P 		92.6
(3)
P 		50.1
(-3)
P 		43
C 71.1
(3)
P 		68.5
(2.3)
P 		47.4
(-3)
P 		61
(0.4)
P 		56.8
(-0.6)
P 		58
(-0.3)
P 		24
avr 54.5
(-2.8) 		75.5
(3) 		56.3
(-2.3) 		65.7
(0.3) 		67.6
(0.8) 		53.7
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191434_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9991
Sequence Type Exemplar sequence
Representative Public ID T25B9.7 NCBI
Target Description T25B9.7 /REP_DB=WormBase Gene ID /WP=CE06506 /TR=Q22770 /GB=CAA94378.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069595(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069595 NCBI Caenorhabditis elegans T25B9.7 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000044115 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10761930:10764319:1 11/11 None
GENEFINDER00000044125 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10761695:10765269:1 10/11 None
T25B9.7 ENSEMBL cdna:known chromosome:CEL140:IV:10761670:10764375:1 gene:T25B9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10761700-10764325(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-54
Ensembl T25B9.7
Entrez Gene 188885 Entrez gene
SwissProt Q22770 EMBL-EBI
WormBase CE32939 Wormbase
Functional Annotations
Ortholog
ID Title Organism
RT-U34:M33746MRNA#2_F_AT UDP-glucuronosyltransferase 2 family, member 5 rn
RG-U34A:M33746MRNA#2_F_AT UDP-glucuronosyltransferase 2 family, member 5 rn
RT-U34:M33747_AT UDP-glucuronosyltransferase 2 family, member 5 rn
RG-U34A:M33747_AT UDP-glucuronosyltransferase 2 family, member 5 rn
RAE230A:1368397_AT UDP-glucuronosyltransferase 2 family, member 5 rn
RAT230_2:1368397_AT UDP-glucuronosyltransferase 2 family, member 5 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94378 Hypothetical protein T25B9.7 [Caenorhabditis elegans] ref|NP_501996.2| T25B9.7 [Caenorhabditis elegans] 0.0
blast CAE70845 Hypothetical protein CBG17629 [Caenorhabditis briggsae] 0.0
blast NP_503771 T03D3.1 [Caenorhabditis elegans] gb|AAG24186.1| Hypothetical protein T03D3.1 [Caenorhabditis elegans] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.7E-33
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.7E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501996.2 2 5-27,479-501
T25B9.7 2 5-27,479-501
SNAP00000044115 1 422-444
GENEFINDER00000044125 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:191434_AT
atgacaatttgactgacgatgctgaattatttgctgattcctcgaatattcatagagtgg
agtggttaccacaaactgatctattaggagataatcgagtgaaggcattcattagtcata
tgggattgaactcttttcttgaaacatcagcagccggaattccagttcttgcagttcctc
ttttcatcgatcaacagcataatgctttgaacgcagtctcacgcgacattggtgtaatcg
tagagagacatcaattaacagttgaaaacttagtcaatgcactacaaaagttgttgtata
atccgaaatatggagaaaatgcaaaaatgatttcaaaaatgatgaatgagaaacccgaac
aatcagagaggctatttgttgattgggttgaatatgcagcaaaaaatccagggcttcata
aaataatgaatctcccgggagcagaactaactccattttggtactatagcgttgatgtta
ttttaatcgttgttctatctttgacgtcttctttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACAATTTGACTGACGATGCTGA 86 45 917 Antisense
GAATTATTTGCTGATTCCTCGAATA 411 323 940 Antisense
GAGTGGTTACCACAAACTGATCTAT 640 401 976 Antisense
GGGATTGAACTCTTTTCTTGAAACA 470 495 1038 Antisense
GGAATTCCAGTTCTTGCAGTTCCTC 271 533 1072 Antisense
GTTCCTCTTTTCATCGATCAACAGC 302 441 1090 Antisense
TAATGCTTTGAACGCAGTCTCACGC 450 633 1116 Antisense
GCAGTCTCACGCGACATTGGTGTAA 65 313 1129 Antisense
AATCTCCCGGGAGCAGAACTAACTC 341 167 1345 Antisense
ACTCCATTTTGGTACTATAGCGTTG 477 99 1366 Antisense
GTTCTATCTTTGACGTCTTCTTTAA 504 443 1408 Antisense
Sequence Source Affymetrix Proprietary Database