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[191431_at] glutathione S-transferase

Description Y53F4B.29 /REP_DB=WormBase Gene ID /WP=CE22416 /TR=Q9NAB4 /GB=CAB61103.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione-S-transferase
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 41      6grp_highest_nonorm > 33      6grp_total > 31      4grp_total > 59      6grp_cgc > 71      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3612
1 2 3 4 range
A 2326.8
(1.3)
P 		3195.2
(3)
P 		3212.6
(3)
P 		78.2
(-3)
A 		3134
B 2115.5
(0.4)
P 		3390.7
(2.5)
P 		3664.2
(3)
P 		51.9
(-3)
A 		3612
C 2362.7
(1.1)
P 		3339.5
(2.9)
P 		3422.3
(3)
P 		84.1
(-3)
A 		3338
avr 2268.3
(0.9) 		3308.5
(2.8) 		3433
(3) 		71.4
(-3) 		3362

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2328
1 2 3 4 5 6 range
A 1834.2
(0.7)
P 		2271.8
(1.8)
P 		2711.1
(3)
P 		1726.7
(0.4)
P 		823.3
(-2)
P 		425.8
(-3)
P 		2285
B 1689.7
(0.3)
P 		1919.4
(0.9)
P 		2734.2
(3)
P 		1763.8
(0.5)
P 		962.8
(-1.6)
P 		406.6
(-3)
P 		2328
C 1623
(0.1)
P 		2098.8
(1.4)
P 		2683.3
(3)
P 		1714.5
(0.4)
P 		893.6
(-1.9)
P 		476.6
(-3)
P 		2207
avr 1715.6
(0.4) 		2096.7
(1.4) 		2709.5
(3) 		1735
(0.4) 		893.2
(-1.8) 		436.3
(-3) 		2273
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1182
1 2 3 4 range
A 847.2
(3)
P 		693.6
(1.9)
P 		839.8
(2.9)
P 		11.4
(-3)
A 		836
B 674.6
(1.8)
P 		837.4
(2.9)
P 		849.1
(3)
P 		11.1
(-3)
A 		838
C 782.1
(0.9)
P 		960.1
(1.8)
P 		1192.8
(3)
P 		14.2
(-3)
A 		1179
avr 768
(1.8) 		830.4
(2.2) 		960.6
(3) 		12.2
(-3) 		948

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 704
1 2 3 4 5 6 range
A 338.1
(-1)
P 		808
(3)
P 		590.4
(1.1)
P 		437.9
(-0.2)
P 		248.4
(-1.8)
P 		103.7
(-3)
P 		704
B 587.9
(2.1)
P 		638.9
(2.7)
P 		664
(3)
P 		467.2
(0.7)
P 		391.2
(-0.2)
P 		151.6
(-3)
P 		512
C 601.6
(2.1)
P 		640.4
(2.5)
P 		682.9
(3)
P 		344.8
(-0.9)
P 		289.2
(-1.5)
P 		159.5
(-3)
P 		523
avr 509.2
(1) 		695.8
(3) 		645.8
(2.5) 		416.6
(-0) 		309.6
(-1.2) 		138.3
(-3) 		558
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3985
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.29 NCBI
Target Description Y53F4B.29 /REP_DB=WormBase Gene ID /WP=CE22416 /TR=Q9NAB4 /GB=CAB61103.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione-S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064714(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064714 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-26) (gst-26) mRNA, complete cds. 11/11 None
SNAP00000043067 ENSEMBL cdna:SNAP chromosome:CEL140:II:15163755:15164433:-1 11/11 None
GENEFINDER00000043121 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15163755:15164433:-1 11/11 None
Y53F4B.29 ENSEMBL cdna:known chromosome:CEL140:II:15163722:15164443:-1 gene:Y53F4B.29 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15163751-15164430(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-26
Ensembl Y53F4B.29
Entrez Gene 190223 Entrez gene
SwissProt Q9NAB4 EMBL-EBI
WormBase CE22416 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61103 Hypothetical protein Y53F4B.29 [Caenorhabditis elegans] ref|NP_497115.1| Glutathione S-Transferase family member (gst-26) [Caenorhabditis elegans] 1.0E-117
blast CAB61104 Hypothetical protein Y53F4B.30 [Caenorhabditis elegans] ref|NP_497116.1| Glutathione S-Transferase family member (gst-27) [Caenorhabditis elegans] 3.0E-98
blast CAB61105 Hypothetical protein Y53F4B.31 [Caenorhabditis elegans] ref|NP_497117.1| Glutathione S-Transferase family member (gst-28) [Caenorhabditis elegans] 5.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.3E-10
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 4.0E-15
Sequence
Target Sequence 
>C. ELEGANS:191431_AT
tacaaactcacctatttcaacgctcgtggctacggagaagctgctcgtattctcttccat
cttgccgatgttccatttgaggatttccgtatgacccatggagatggaacatgggaaaag
ctgaaagaaaaaactccactcggacaagtcccggtcctatccgtcgatggatttgaaatt
ccacaatctgctgcaatcatccgctatcttgccaataaatttggatatgctggaaaaacc
ccggaagagcaagcttgggcagatgccatcgttgaccaattcaaggatttcatgggatcc
ttcagagaagtcggaaaagcacatgccgctggaaagccagctgaggagattgcaaagatc
atgcaatcagatgtcgttccggctagagatgcattcttcgtaatcatcaatgggatcctg
gagaagagcaagtcaggattcttggttggagatgggctcacttttgccgatattgtagtt
gtggagtgcatcacaactttggacaaaaatcagttattcactccagcgggagagccaaag
ttggttgctcttcgggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAAACTCACCTATTTCAACGCTC 212 643 22 Antisense
CAACGCTCGTGGCTACGGAGAAGCT 108 181 39 Antisense
GGAGAAGCTGCTCGTATTCTCTTCC 634 519 55 Antisense
GAGGATTTCCGTATGACCCATGGAG 546 403 100 Antisense
GATGCCATCGTTGACCAATTCAAGG 342 415 283 Antisense
AAAGCACATGCCGCTGGAAAGCCAG 284 123 337 Antisense
TGCAATCAGATGTCGTTCCGGCTAG 405 575 383 Antisense
TTCCGGCTAGAGATGCATTCTTCGT 258 699 398 Antisense
GAGATGGGCTCACTTTTGCCGATAT 127 397 470 Antisense
AAATCAGTTATTCACTCCAGCGGGA 238 117 528 Antisense
CCAAAGTTGGTTGCTCTTCGGGAGA 183 273 556 Antisense
Sequence Source Affymetrix Proprietary Database